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Conformers: ABBIImiBZICOPNSYNN
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STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES

Results of the assignment of 140 detected steps in 5 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011ebq-m1_A_G1_G2AAAAA00860.16 AA00
0021ebq-m2_A_G1_G2AAAAA00840.16 AA00
0031ebq-m3_A_G1_G2AAAAA00880.14 AA00
0041ebq-m4_A_G1_G2AAAAA00850.14 AA00
0051ebq-m5_A_G1_G2AAAAA00850.14 AA00
0061ebq-m1_A_G2_U3AAAAA00870.14 AA00
0071ebq-m2_A_G2_U3AAAAA00840.16 AA00
0081ebq-m3_A_G2_U3AAAAA00860.15 AA00
0091ebq-m4_A_G2_U3AAAAA00850.14 AA00
0101ebq-m5_A_G2_U3AAAAA00840.15 AA00
0111ebq-m1_A_U3_G4AAAAA00870.15 AA00
0121ebq-m2_A_U3_G4AAAAA00820.14 AA00
0131ebq-m3_A_U3_G4AAAAA00870.13 AA00
0141ebq-m4_A_U3_G4AAAAA00850.13 AA00
0151ebq-m5_A_U3_G4AAAAA00820.13 AA00
0161ebq-m1_A_G4_G5NANNANT01.38 OP24
0171ebq-m2_A_G4_G5A-BAB04290.41 AB04
0181ebq-m3_A_G4_G5NANNANT01.28 OP24
0191ebq-m4_A_G4_G5NANNANT00.39 AA11
0201ebq-m5_A_G4_G5NANNANT00.76 BA09
0211ebq-m1_A_G5_G6AAwAA01120.34 AA01
0221ebq-m2_A_G5_G6NANNANT00.62 AB02
0231ebq-m3_A_G5_G6NANNANT00.68 AB02
0241ebq-m4_A_G5_G6NANNANT00.24 AA01
0251ebq-m5_A_G5_G6NANNANT00.77 BA09
0261ebq-m1_A_G6_C7NANNANT00.65 AA04
0271ebq-m2_A_G6_C7NANNANT00.33 AA00
0281ebq-m3_A_G6_C7AAAAA09120.36 AA09
0291ebq-m4_A_G6_C7NANNANT00.83 AA04
0301ebq-m5_A_G6_C7NANNANT00.44 AA00
0311ebq-m1_A_C7_G8AAAAA00750.16 AA00
0321ebq-m2_A_C7_G8AAAAA00500.17 AA00
0331ebq-m3_A_C7_G8AAAAA00400.19 AA00
0341ebq-m4_A_C7_G8AAAAA00700.15 AA00
0351ebq-m5_A_C7_G8AAAAA00710.16 AA00
0361ebq-m1_A_G8_C9AAAAA00830.14 AA00
0371ebq-m2_A_G8_C9AAAAA00800.14 AA00
0381ebq-m3_A_G8_C9AAAAA00770.15 AA00
0391ebq-m4_A_G8_C9AAAAA00840.13 AA00
0401ebq-m5_A_G8_C9AAAAA00780.15 AA00
0411ebq-m1_A_C9_A10AAAAA00810.14 AA00
0421ebq-m2_A_C9_A10AAAAA00800.17 AA00
0431ebq-m3_A_C9_A10AAAAA00800.16 AA00
0441ebq-m4_A_C9_A10AAAAA00830.13 AA00
0451ebq-m5_A_C9_A10AAAAA00780.16 AA00
0461ebq-m1_A_A10_G11AAAAA00860.15 AA00
0471ebq-m2_A_A10_G11AAAAA00840.15 AA00
0481ebq-m3_A_A10_G11AAAAA00820.15 AA00
0491ebq-m4_A_A10_G11AAAAA00880.16 AA00
0501ebq-m5_A_A10_G11AAAAA00850.14 AA00
0511ebq-m1_A_G11_C12AAAAA00810.20 AA00
0521ebq-m2_A_G11_C12AAAAA00840.17 AA00
0531ebq-m3_A_G11_C12AAAAA00830.14 AA00
0541ebq-m4_A_G11_C12AAAAA00830.20 AA00
0551ebq-m5_A_G11_C12AAAAA00850.15 AA00
0561ebq-m1_A_C12_U13AAwAA01360.40 AA01
0571ebq-m2_A_C12_U13AAwAA01300.43 AA01
0581ebq-m3_A_C12_U13AAwAA05450.38 AA05
0591ebq-m4_A_C12_U13AAwAA01480.37 AA01
0601ebq-m5_A_C12_U13AAwAA05520.37 AA05
0611ebq-m1_A_U13_U14NANNANT01.04 AA05
0621ebq-m2_A_U13_U14NANNANT01.02 AA05
0631ebq-m3_A_U13_U14NANNANT01.81 OP17
0641ebq-m4_A_U13_U14NANNANT01.36 OP09
0651ebq-m5_A_U13_U14NANNANT01.68 AA10
0661ebq-m1_A_U14_C15NANNANT01.31 OP20
0671ebq-m2_A_U14_C15NANNANT00.79 OP27
0681ebq-m3_A_U14_C15NANNANT00.98 OP20
0691ebq-m4_A_U14_C15NANNANT00.81 BB03
0701ebq-m5_A_U14_C15NANNANT02.41 IC04
0711ebq-m1_A_C15_G16NANNANT00.81 BB2S
0721ebq-m2_A_C15_G16NANNANT01.23 BB2S
0731ebq-m3_A_C15_G16NANNANT00.73 ZZ2S
0741ebq-m4_A_C15_G16NANNANT01.00 BB2S
0751ebq-m5_A_C15_G16NANNANT01.25 BB2S
0761ebq-m1_A_G16_G17SYNAAS1610.40 AAS1
0771ebq-m2_A_G16_G17SYNAAS1300.45 AAS1
0781ebq-m3_A_G16_G17SYNAAS1380.59 AAS1
0791ebq-m4_A_G16_G17SYNAAS1610.41 AAS1
0801ebq-m5_A_G16_G17SYNAAS1200.44 AAS1
0811ebq-m1_A_G17_C18AAAAA00880.14 AA00
0821ebq-m2_A_G17_C18AAAAA00790.17 AA00
0831ebq-m3_A_G17_C18AAAAA00810.14 AA00
0841ebq-m4_A_G17_C18AAAAA00860.14 AA00
0851ebq-m5_A_G17_C18AAAAA00860.17 AA00
0861ebq-m1_A_C18_U19AAAAA00850.20 AA00
0871ebq-m2_A_C18_U19AAAAA00830.14 AA00
0881ebq-m3_A_C18_U19AAAAA00790.15 AA00
0891ebq-m4_A_C18_U19AAAAA00830.22 AA00
0901ebq-m5_A_C18_U19AAAAA00830.18 AA00
0911ebq-m1_A_U19_G20AAAAA00900.13 AA00
0921ebq-m2_A_U19_G20AAAAA00800.16 AA00
0931ebq-m3_A_U19_G20AAAAA00780.17 AA00
0941ebq-m4_A_U19_G20AAAAA00840.15 AA00
0951ebq-m5_A_U19_G20AAAAA00810.16 AA00
0961ebq-m1_A_G20_C21AAAAA00840.14 AA00
0971ebq-m2_A_G20_C21AAAAA00820.16 AA00
0981ebq-m3_A_G20_C21AAAAA00790.17 AA00
0991ebq-m4_A_G20_C21AAAAA00790.17 AA00
1001ebq-m5_A_G20_C21AAAAA00790.17 AA00
1011ebq-m1_A_C21_G22AAAAA00780.18 AA00
1021ebq-m2_A_C21_G22AAAAA00740.19 AA00
1031ebq-m3_A_C21_G22AAAAA00680.19 AA00
1041ebq-m4_A_C21_G22AAAAA00790.14 AA00
1051ebq-m5_A_C21_G22AAAAA00730.18 AA00
1061ebq-m1_A_G22_G23NANNANT01.32 BB1S
1071ebq-m2_A_G22_G23NANNANT00.90 OP08
1081ebq-m3_A_G22_G23NANNANT00.98 OP08
1091ebq-m4_A_G22_G23NANNANT01.31 BB1S
1101ebq-m5_A_G22_G23NANNANT00.81 OP08
1111ebq-m1_A_G23_U24NANNANT01.61 OP27
1121ebq-m2_A_G23_U24NANNANT01.81 OPS1
1131ebq-m3_A_G23_U24NANNANT01.34 ZZS1
1141ebq-m4_A_G23_U24NANNANT01.86 ZZS2
1151ebq-m5_A_G23_U24NANNANT01.85 OP23
1161ebq-m1_A_U24_A25NANNANT01.19 OP31
1171ebq-m2_A_U24_A25NANNANT01.84 IC07
1181ebq-m3_A_U24_A25NANNANT01.18 OP17
1191ebq-m4_A_U24_A25NANNANT01.14 OP17
1201ebq-m5_A_U24_A25NANNANT00.94 OP27
1211ebq-m1_A_A25_C26AAAAA04190.37 AA04
1221ebq-m2_A_A25_C26NANNANT00.51 AA04
1231ebq-m3_A_A25_C26NANNANT00.48 AA04
1241ebq-m4_A_A25_C26NANNANT00.70 AA00
1251ebq-m5_A_A25_C26NANNANT00.53 AA00
1261ebq-m1_A_C26_A27AAAAA00830.17 AA00
1271ebq-m2_A_C26_A27AAAAA00780.19 AA00
1281ebq-m3_A_C26_A27AAAAA00760.20 AA00
1291ebq-m4_A_C26_A27AAAAA00820.17 AA00
1301ebq-m5_A_C26_A27AAAAA00780.19 AA00
1311ebq-m1_A_A27_C28AAAAA00810.16 AA00
1321ebq-m2_A_A27_C28AAAAA00800.16 AA00
1331ebq-m3_A_A27_C28AAAAA00810.16 AA00
1341ebq-m4_A_A27_C28AAAAA00830.13 AA00
1351ebq-m5_A_A27_C28AAAAA00790.15 AA00
1361ebq-m1_A_C28_C29AAAAA00680.16 AA00
1371ebq-m2_A_C28_C29AAAAA00680.16 AA00
1381ebq-m3_A_C28_C29AAAAA00660.16 AA00
1391ebq-m4_A_C28_C29AAAAA00680.17 AA00
1401ebq-m5_A_C28_C29AAAAA00680.15 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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