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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Core of the Alu domain of the mammalian SRP

Results of the assignment of 49 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011e8o_E_GDP99_G100AAAAA03710.24 AA03
021e8o_E_G100_G101AAwAA10250.31 AA10
031e8o_E_G101_C102AAAAA03770.25 AA03
041e8o_E_C102_C103AAAAA00770.28 AA00
051e8o_E_C103_G104NANNANT00.81 OP06
061e8o_E_G104_G105AAAAA00680.14 AA00
071e8o_E_G105_G106AAAAA00560.27 AA00
081e8o_E_G106_C107AAAAA00880.18 AA00
091e8o_E_C107_G108AAAAA00480.15 AA00
101e8o_E_G108_C109AAAAA04860.13 AA04
111e8o_E_C109_G110AAAAA03690.29 AA03
121e8o_E_G110_G111AAAAA03780.31 AA03
131e8o_E_G111_U112AAAAA00250.29 AA00
141e8o_E_U112_G113OPNOP04810.17 OP04
151e8o_E_G113_G114AAAAA08840.22 AA08
161e8o_E_G114_C115AAAAA00460.24 AA00
171e8o_E_C115_G116AAAAA00430.28 AA00
181e8o_E_G116_C117NANNANT00.86 AA08
191e8o_E_C117_G118AAAAA00240.34 AA00
201e8o_E_G118_C119AAAAA00660.17 AA00
211e8o_E_C119_G120AAAAA00700.20 AA00
221e8o_E_G120_C121AAAAA00420.21 AA00
231e8o_E_C121_C122AAAAA00560.33 AA00
241e8o_E_C122_U123AAAAA00180.34 AA00
251e8o_E_U123_G124AAwAA01120.65 AA01
261e8o_E_G124_U125AAAAA00750.20 AA00
271e8o_E_U125_A126OPNOP04800.16 OP04
281e8o_E_A126_G127AAAAA08860.28 AA08
291e8o_E_G127_U128NANNANT01.58 IC03
301e8o_E_U128_C129NANNANT00.41 BA10
311e8o_E_C129_C130AAAAA00840.18 AA00
321e8o_E_C130_C131AAAAA00590.24 AA00
331e8o_E_C131_A132NANNANT00.61 AA11
341e8o_E_A132_G133NANNANT00.66 BA08
351e8o_E_G133_C134AAAAA00520.29 AA00
361e8o_E_C134_U135A-BAB05440.43 AB05
371e8o_E_U135_A136NANNANT00.65 OP22
381e8o_E_A136_C137NANNANT00.74 ZZ1S
391e8o_E_C137_U138NANNANT01.81 OP05
401e8o_E_U138_C139NANNANT00.64 OPS1
411e8o_E_C139_G140OPNOP13240.82 OP13
421e8o_E_G140_G141AAAAA00760.21 AA00
431e8o_E_G141_G142AAAAA00190.26 AA00
441e8o_E_G142_A143AAAAA00340.27 AA00
451e8o_E_A143_G144AAwAA01710.21 AA01
461e8o_E_G144_G145AAAAA08850.14 AA08
471e8o_E_G145_C146AAAAA00790.24 AA00
481e8o_E_C146_U147AAAAA00670.28 AA00
491e8o_E_U147_C148NANNANT00.81 IC03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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