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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011e7k_C_G26_C27AAAAA08790.18 AA08
021e7k_C_C27_C28AAAAA00910.19 AA00
031e7k_C_C28_A29AAAAA00390.38 AA00
041e7k_C_A29_A30NANNANT00.98 BB2S
051e7k_C_A30_U31NANNANT00.58 OP21
061e7k_C_U31_G32NANNANT01.99 IC04
071e7k_C_G32_A33NANNANT01.94 OP27
081e7k_C_A33_G34NANNANT00.74 AB05
091e7k_C_G34_G35NANNANT00.69 BB10
101e7k_C_C41_C42AAAAA04610.42 AA04
111e7k_C_C42_G43A-BAB05620.57 AB05
121e7k_C_G43_A44NANNANT01.01 OP22
131e7k_C_A44_G45OPNOP24630.24 OP24
141e7k_C_G45_G46AAAAA00700.21 AA00
151e7k_C_G46_C47AAAAA00270.32 AA00
161e7k_D_G26_C27AAAAA00710.20 AA00
171e7k_D_C27_C28AAAAA00840.15 AA00
181e7k_D_C28_A29AAAAA00460.31 AA00
191e7k_D_A29_A30NANNANT01.11 BB2S
201e7k_D_A30_U31NANNANT00.56 OP21
211e7k_D_U31_G32NANNANT00.52 OP20
221e7k_D_G32_A33NANNANT00.87 OP15
231e7k_D_A33_G34A-BAB05490.53 AB05
241e7k_D_G34_G35B-ABA08750.25 BA08
251e7k_D_C41_C42AAAAA04700.28 AA04
261e7k_D_C42_G43NANNANT00.77 AA08
271e7k_D_G43_A44NANNANT00.92 OP22
281e7k_D_A44_G45OPNOP24710.26 OP24
291e7k_D_G45_G46AAAAA08560.23 AA08
301e7k_D_G46_C47AAAAA00770.21 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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