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Conformers: ABBIImiBZICOPNSYNN
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HMG-D complexed to a bulge DNA

Results of the assignment of 240 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011e7j-m10_B_DC1_DG2BBBBB00140.43 BB00
0021e7j-m1_B_DC1_DG2BBBBB00250.41 BB00
0031e7j-m2_B_DC1_DG2BBBBB00170.47 BB00
0041e7j-m3_B_DC1_DG2BBBBB00200.41 BB00
0051e7j-m4_B_DC1_DG2NANNANT00.40 BB04
0061e7j-m5_B_DC1_DG2BBBBB00560.30 BB00
0071e7j-m6_B_DC1_DG2BBBBB00430.32 BB00
0081e7j-m7_B_DC1_DG2BBBBB00330.36 BB00
0091e7j-m8_B_DC1_DG2BBBBB00230.41 BB00
0101e7j-m9_B_DC1_DG2BBBBB00320.42 BB00
0111e7j-m10_B_DG2_DA3BBBBB00630.28 BB00
0121e7j-m1_B_DG2_DA3BBBBB00660.26 BB00
0131e7j-m2_B_DG2_DA3BBBBB00590.29 BB00
0141e7j-m3_B_DG2_DA3BBBBB00610.32 BB00
0151e7j-m4_B_DG2_DA3BBBBB00640.36 BB00
0161e7j-m5_B_DG2_DA3BBBBB00580.32 BB00
0171e7j-m6_B_DG2_DA3BBBBB00590.35 BB00
0181e7j-m7_B_DG2_DA3BBBBB00740.24 BB00
0191e7j-m8_B_DG2_DA3BBBBB00670.24 BB00
0201e7j-m9_B_DG2_DA3BBBBB00640.29 BB00
0211e7j-m10_B_DA3_DT4BBBBB01320.34 BB01
0221e7j-m1_B_DA3_DT4BBBBB01450.32 BB01
0231e7j-m2_B_DA3_DT4B-ABA05340.22 BA05
0241e7j-m3_B_DA3_DT4NANNANT00.49 BA08
0251e7j-m4_B_DA3_DT4B12BB04660.19 BB04
0261e7j-m5_B_DA3_DT4B-ABA05140.27 BA05
0271e7j-m6_B_DA3_DT4BBBBB00530.26 BB00
0281e7j-m7_B_DA3_DT4BBBBB00620.34 BB00
0291e7j-m8_B_DA3_DT4NANNANT00.50 BA08
0301e7j-m9_B_DA3_DT4BBBBB00610.34 BB00
0311e7j-m10_B_DT4_DA5NANNANT00.52 BB16
0321e7j-m1_B_DT4_DA5BBwBB16190.50 BB16
0331e7j-m2_B_DT4_DA5A-BAB0190.51 AB01
0341e7j-m3_B_DT4_DA5A-BAB01150.52 AB01
0351e7j-m4_B_DT4_DA5NANNANT00.38 BB16
0361e7j-m5_B_DT4_DA5A-BAB01310.37 AB01
0371e7j-m6_B_DT4_DA5BBwBB16140.43 BB16
0381e7j-m7_B_DT4_DA5BBwBB16110.38 BB16
0391e7j-m8_B_DT4_DA5A-BAB01270.37 AB01
0401e7j-m9_B_DT4_DA5BBBBB00300.62 BB00
0411e7j-m10_B_DA5_DT6BBBBB00670.23 BB00
0421e7j-m1_B_DA5_DT6BBBBB00630.22 BB00
0431e7j-m2_B_DA5_DT6BBBBB00730.22 BB00
0441e7j-m3_B_DA5_DT6BBBBB00420.27 BB00
0451e7j-m4_B_DA5_DT6BBBBB00530.26 BB00
0461e7j-m5_B_DA5_DT6B-ABA05830.14 BA05
0471e7j-m6_B_DA5_DT6BBBBB00450.29 BB00
0481e7j-m7_B_DA5_DT6BBBBB00550.27 BB00
0491e7j-m8_B_DA5_DT6B-ABA05520.27 BA05
0501e7j-m9_B_DA5_DT6B-ABA05820.20 BA05
0511e7j-m10_B_DT6_DT7NANNANT00.62 BB11
0521e7j-m1_B_DT6_DT7NANNANT00.51 BA13
0531e7j-m2_B_DT6_DT7B-ABA08280.56 BA08
0541e7j-m3_B_DT6_DT7NANNANT00.71 BA10
0551e7j-m4_B_DT6_DT7NANNANT00.57 AA01
0561e7j-m5_B_DT6_DT7NANNANT00.59 AA01
0571e7j-m6_B_DT6_DT7NANNANT00.58 BB11
0581e7j-m7_B_DT6_DT7NANNANT00.56 AA01
0591e7j-m8_B_DT6_DT7NANNANT01.60 AB1S
0601e7j-m9_B_DT6_DT7NANNANT00.60 BB03
0611e7j-m10_B_DT7_DA8NANNANT01.28 AA04
0621e7j-m1_B_DT7_DA8AAAAA00420.35 AA00
0631e7j-m2_B_DT7_DA8AAAAA00730.29 AA00
0641e7j-m3_B_DT7_DA8AAwAA01630.30 AA01
0651e7j-m4_B_DT7_DA8AAAAA00400.44 AA00
0661e7j-m5_B_DT7_DA8NANNANT00.78 ZZ01
0671e7j-m6_B_DT7_DA8NANNANT00.52 ZZ01
0681e7j-m7_B_DT7_DA8AAAAA08510.51 AA08
0691e7j-m8_B_DT7_DA8NANNANT00.99 BA16
0701e7j-m9_B_DT7_DA8NANNANT01.08 BB03
0711e7j-m10_B_DA8_DA9NANNANT00.64 AA01
0721e7j-m1_B_DA8_DA9NANNANT00.93 IC04
0731e7j-m2_B_DA8_DA9NANNANT00.48 AA01
0741e7j-m3_B_DA8_DA9A-BAB05540.45 AB05
0751e7j-m4_B_DA8_DA9NANNANT00.67 IC04
0761e7j-m5_B_DA8_DA9NANNANT00.61 BB03
0771e7j-m6_B_DA8_DA9NANNANT00.68 AA01
0781e7j-m7_B_DA8_DA9NANNANT00.86 OP08
0791e7j-m8_B_DA8_DA9NANNANT01.59 BB03
0801e7j-m9_B_DA8_DA9NANNANT01.17 AA11
0811e7j-m10_B_DA9_DG10BBBBB00200.36 BB00
0821e7j-m1_B_DA9_DG10BBBBB00610.22 BB00
0831e7j-m2_B_DA9_DG10NANNANT00.70 OP22
0841e7j-m3_B_DA9_DG10NANNANT00.93 BB04
0851e7j-m4_B_DA9_DG10NANNANT00.60 OP22
0861e7j-m5_B_DA9_DG10NANNANT01.21 OP22
0871e7j-m6_B_DA9_DG10BBBBB00320.30 BB00
0881e7j-m7_B_DA9_DG10BBBBB0080.83 BB00
0891e7j-m8_B_DA9_DG10NANNANT00.85 OP22
0901e7j-m9_B_DA9_DG10A-BAB01330.33 AB01
0911e7j-m10_B_DG10_DA11B12BB04590.29 BB04
0921e7j-m1_B_DG10_DA11B12BB04610.29 BB04
0931e7j-m2_B_DG10_DA11BBBBB00670.22 BB00
0941e7j-m3_B_DG10_DA11B12BB04650.23 BB04
0951e7j-m4_B_DG10_DA11BBBBB00630.29 BB00
0961e7j-m5_B_DG10_DA11B12BB04610.26 BB04
0971e7j-m6_B_DG10_DA11B12BB04630.24 BB04
0981e7j-m7_B_DG10_DA11BB2BB07610.32 BB07
0991e7j-m8_B_DG10_DA11BBBBB00680.24 BB00
1001e7j-m9_B_DG10_DA11B12BB04560.29 BB04
1011e7j-m10_B_DA11_DG12BBBBB00770.22 BB00
1021e7j-m1_B_DA11_DG12BBBBB00760.24 BB00
1031e7j-m2_B_DA11_DG12BBBBB00730.26 BB00
1041e7j-m3_B_DA11_DG12BBBBB00760.20 BB00
1051e7j-m4_B_DA11_DG12BBBBB00760.24 BB00
1061e7j-m5_B_DA11_DG12BBBBB00770.21 BB00
1071e7j-m6_B_DA11_DG12BBBBB00690.32 BB00
1081e7j-m7_B_DA11_DG12BBBBB00770.23 BB00
1091e7j-m8_B_DA11_DG12BBBBB00740.24 BB00
1101e7j-m9_B_DA11_DG12BBBBB00750.24 BB00
1111e7j-m10_B_DG12_DC13BB2BB07490.29 BB07
1121e7j-m1_B_DG12_DC13BB2BB07530.28 BB07
1131e7j-m2_B_DG12_DC13B12BB04510.29 BB04
1141e7j-m3_B_DG12_DC13BB2BB07390.33 BB07
1151e7j-m4_B_DG12_DC13BB2BB07520.29 BB07
1161e7j-m5_B_DG12_DC13BB2BB07390.33 BB07
1171e7j-m6_B_DG12_DC13BB2BB07590.27 BB07
1181e7j-m7_B_DG12_DC13BB2BB07530.29 BB07
1191e7j-m8_B_DG12_DC13BB2BB07560.27 BB07
1201e7j-m9_B_DG12_DC13BB2BB07570.27 BB07
1211e7j-m10_B_DC13_DC14BBwBB16360.49 BB16
1221e7j-m1_B_DC13_DC14NANNANT00.53 BB16
1231e7j-m2_B_DC13_DC14BBwBB16430.46 BB16
1241e7j-m3_B_DC13_DC14BBwBB16390.46 BB16
1251e7j-m4_B_DC13_DC14BBwBB16320.53 BB16
1261e7j-m5_B_DC13_DC14BBwBB16690.30 BB16
1271e7j-m6_B_DC13_DC14NANNANT00.55 BB16
1281e7j-m7_B_DC13_DC14BBwBB16350.50 BB16
1291e7j-m8_B_DC13_DC14NANNANT00.49 BB16
1301e7j-m9_B_DC13_DC14NANNANT00.53 BB16
1311e7j-m10_C_DG15_DG16BB2BB07510.42 BB07
1321e7j-m1_C_DG15_DG16NANNANT00.65 BB07
1331e7j-m2_C_DG15_DG16BB2BB07550.45 BB07
1341e7j-m3_C_DG15_DG16BB2BB07480.47 BB07
1351e7j-m4_C_DG15_DG16NANNANT00.66 BB07
1361e7j-m5_C_DG15_DG16BB2BB07780.27 BB07
1371e7j-m6_C_DG15_DG16NANNANT00.40 BB16
1381e7j-m7_C_DG15_DG16NANNANT00.62 BB07
1391e7j-m8_C_DG15_DG16NANNANT00.64 BB07
1401e7j-m9_C_DG15_DG16NANNANT00.67 BB07
1411e7j-m10_C_DG16_DC17BBBBB01480.26 BB01
1421e7j-m1_C_DG16_DC17BBBBB01530.24 BB01
1431e7j-m2_C_DG16_DC17BBBBB01610.22 BB01
1441e7j-m3_C_DG16_DC17BBBBB01580.24 BB01
1451e7j-m4_C_DG16_DC17BBBBB01540.26 BB01
1461e7j-m5_C_DG16_DC17BBBBB01620.19 BB01
1471e7j-m6_C_DG16_DC17B12BB04410.39 BB04
1481e7j-m7_C_DG16_DC17BBBBB01510.26 BB01
1491e7j-m8_C_DG16_DC17BBBBB01410.26 BB01
1501e7j-m9_C_DG16_DC17B12BB04540.25 BB04
1511e7j-m10_C_DC17_DT18BBBBB00510.32 BB00
1521e7j-m1_C_DC17_DT18BBBBB00610.25 BB00
1531e7j-m2_C_DC17_DT18BBBBB00660.26 BB00
1541e7j-m3_C_DC17_DT18BBBBB00540.32 BB00
1551e7j-m4_C_DC17_DT18BBBBB00650.26 BB00
1561e7j-m5_C_DC17_DT18BBBBB00580.31 BB00
1571e7j-m6_C_DC17_DT18BBBBB00620.25 BB00
1581e7j-m7_C_DC17_DT18BBBBB00560.27 BB00
1591e7j-m8_C_DC17_DT18BBBBB00730.28 BB00
1601e7j-m9_C_DC17_DT18BBBBB00600.24 BB00
1611e7j-m10_C_DT18_DC19BBwBB16610.30 BB16
1621e7j-m1_C_DT18_DC19BBwBB16350.32 BB16
1631e7j-m2_C_DT18_DC19BBBBB00660.29 BB00
1641e7j-m3_C_DT18_DC19BBBBB00130.67 BB00
1651e7j-m4_C_DT18_DC19BBBBB00500.48 BB00
1661e7j-m5_C_DT18_DC19BBBBB00330.58 BB00
1671e7j-m6_C_DT18_DC19BBBBB00290.60 BB00
1681e7j-m7_C_DT18_DC19BBwBB16460.38 BB16
1691e7j-m8_C_DT18_DC19B12BB04570.22 BB04
1701e7j-m9_C_DT18_DC19BBwBB16380.33 BB16
1711e7j-m10_C_DC19_DA20NANNANT00.72 IC03
1721e7j-m1_C_DC19_DA20NANNANT01.17 BB11
1731e7j-m2_C_DC19_DA20NANNANT00.73 IC04
1741e7j-m3_C_DC19_DA20NANNANT01.13 BB02
1751e7j-m4_C_DC19_DA20NANNANT01.38 OP20
1761e7j-m5_C_DC19_DA20NANNANT00.76 IC07
1771e7j-m6_C_DC19_DA20NANNANT00.81 IC07
1781e7j-m7_C_DC19_DA20NANNANT00.63 IC03
1791e7j-m8_C_DC19_DA20NANNANT01.54 BB13
1801e7j-m9_C_DC19_DA20NANNANT01.09 BB10
1811e7j-m10_C_DA20_DA21BBBBB00370.40 BB00
1821e7j-m1_C_DA20_DA21BBwBB16800.22 BB16
1831e7j-m2_C_DA20_DA21BBwBB16730.24 BB16
1841e7j-m3_C_DA20_DA21BBBBB00370.44 BB00
1851e7j-m4_C_DA20_DA21BBBBB00410.29 BB00
1861e7j-m5_C_DA20_DA21A-BAB05780.26 AB05
1871e7j-m6_C_DA20_DA21BBwBB16790.29 BB16
1881e7j-m7_C_DA20_DA21BBBBB00410.50 BB00
1891e7j-m8_C_DA20_DA21BBBBB00330.61 BB00
1901e7j-m9_C_DA20_DA21A-BAB01480.30 AB01
1911e7j-m10_C_DA21_DT22B-ABA05120.35 BA05
1921e7j-m1_C_DA21_DT22B-ABA08520.30 BA08
1931e7j-m2_C_DA21_DT22B-ABA08660.27 BA08
1941e7j-m3_C_DA21_DT22B-ABA08500.31 BA08
1951e7j-m4_C_DA21_DT22B-ABA01250.23 BA01
1961e7j-m5_C_DA21_DT22BBBBB01610.21 BB01
1971e7j-m6_C_DA21_DT22B-ABA08690.26 BA08
1981e7j-m7_C_DA21_DT22B-ABA08710.27 BA08
1991e7j-m8_C_DA21_DT22B-ABA01450.22 BA01
2001e7j-m9_C_DA21_DT22B-ABA01250.23 BA01
2011e7j-m10_C_DT22_DA23NANNANT00.48 BB16
2021e7j-m1_C_DT22_DA23BBwBB16270.47 BB16
2031e7j-m2_C_DT22_DA23NANNANT00.52 AB05
2041e7j-m3_C_DT22_DA23BBwBB16280.46 BB16
2051e7j-m4_C_DT22_DA23A-BAB01200.37 AB01
2061e7j-m5_C_DT22_DA23BBwBB16350.46 BB16
2071e7j-m6_C_DT22_DA23NANNANT00.52 BB16
2081e7j-m7_C_DT22_DA23NANNANT00.56 AB03
2091e7j-m8_C_DT22_DA23A-BAB01300.40 AB01
2101e7j-m9_C_DT22_DA23A-BAB01230.40 AB01
2111e7j-m10_C_DA23_DT24BBBBB00520.23 BB00
2121e7j-m1_C_DA23_DT24BBBBB01730.18 BB01
2131e7j-m2_C_DA23_DT24BBBBB00580.23 BB00
2141e7j-m3_C_DA23_DT24BBBBB01690.21 BB01
2151e7j-m4_C_DA23_DT24BBBBB00690.16 BB00
2161e7j-m5_C_DA23_DT24BBBBB01730.24 BB01
2171e7j-m6_C_DA23_DT24BBBBB00650.20 BB00
2181e7j-m7_C_DA23_DT24BBBBB00680.20 BB00
2191e7j-m8_C_DA23_DT24BBBBB00560.20 BB00
2201e7j-m9_C_DA23_DT24BBBBB00650.24 BB00
2211e7j-m10_C_DT24_DC25BBBBB00640.35 BB00
2221e7j-m1_C_DT24_DC25BBBBB00740.24 BB00
2231e7j-m2_C_DT24_DC25BBBBB00660.38 BB00
2241e7j-m3_C_DT24_DC25BBBBB00600.37 BB00
2251e7j-m4_C_DT24_DC25BBBBB00710.28 BB00
2261e7j-m5_C_DT24_DC25BBBBB00660.35 BB00
2271e7j-m6_C_DT24_DC25BBBBB00690.34 BB00
2281e7j-m7_C_DT24_DC25BBBBB00580.37 BB00
2291e7j-m8_C_DT24_DC25BBBBB00690.31 BB00
2301e7j-m9_C_DT24_DC25BBBBB00700.29 BB00
2311e7j-m10_C_DC25_DG26BB2BB07620.30 BB07
2321e7j-m1_C_DC25_DG26BB2BB07570.33 BB07
2331e7j-m2_C_DC25_DG26BB2BB07660.26 BB07
2341e7j-m3_C_DC25_DG26B12BB04330.33 BB04
2351e7j-m4_C_DC25_DG26BB2BB07570.29 BB07
2361e7j-m5_C_DC25_DG26BB2BB07540.33 BB07
2371e7j-m6_C_DC25_DG26B12BB04580.31 BB04
2381e7j-m7_C_DC25_DG26B12BB04370.32 BB04
2391e7j-m8_C_DC25_DG26BB2BB07610.32 BB07
2401e7j-m9_C_DC25_DG26B12BB04540.27 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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