Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
STRUCTURE OF THE RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011dul_B_G130_G131AAAAA00850.16 AA00
021dul_B_G131_C132AAAAA00970.08 AA00
031dul_B_C132_U133AAAAA00980.12 AA00
041dul_B_U133_C134AAAAA00950.12 AA00
051dul_B_C134_U135AAAAA00960.13 AA00
061dul_B_U135_G136AAAAA00880.12 AA00
071dul_B_G136_U137AAAAA08830.21 AA08
081dul_B_U137_U138AAAAA00910.16 AA00
091dul_B_U138_U139AAAAA00490.27 AA00
101dul_B_U139_A140NANNANT01.38 OP17
111dul_B_A140_C141AAAAA00400.35 AA00
121dul_B_C141_C142AAAAA00320.48 AA00
131dul_B_C142_A143NANNANT00.98 OP28
141dul_B_A143_G144OPNOP11360.82 OP11
151dul_B_G144_G145AAAAA00700.20 AA00
161dul_B_G145_U146AAAAA00900.17 AA00
171dul_B_U146_C147AAwAA01670.41 AA01
181dul_B_C147_A148AAuAA13770.19 AA13
191dul_B_A148_G149AAAAA08500.47 AA08
201dul_B_G149_G150AAAAA08770.29 AA08
211dul_B_G150_U151AAAAA00870.31 AA00
221dul_B_U151_C152AAAAA00890.15 AA00
231dul_B_C152_C153AAAAA00760.24 AA00
241dul_B_C153_G154AAAAA00910.23 AA00
251dul_B_G154_A155OPNOP03880.12 OP03
261dul_B_A155_A156AAAAA08770.28 AA08
271dul_B_A156_A157AAAAA00230.36 AA00
281dul_B_A157_G158AAwAA05830.18 AA05
291dul_B_G158_G159AAwAA01820.22 AA01
301dul_B_G159_A160AAAAA00570.25 AA00
311dul_B_A160_A161AAAAA00880.15 AA00
321dul_B_A161_G162AAAAA00340.46 AA00
331dul_B_G162_C163AAuAA12900.41 AA12
341dul_B_C163_A164AAAAA00890.22 AA00
351dul_B_A164_G165AAAAA00570.34 AA00
361dul_B_G165_C166AAAAA00740.26 AA00
371dul_B_C166_C167AAAAA00920.20 AA00
381dul_B_C167_A168AAAAA00860.22 AA00
391dul_B_A168_A169AAAAA00220.41 AA00
401dul_B_A169_G170AAAAA00840.10 AA00
411dul_B_G170_G171AAAAA00680.26 AA00
421dul_B_G171_C172AAAAA00770.25 AA00
431dul_B_C172_A173AAwAA01970.09 AA01
441dul_B_A173_G174AAAAA00780.20 AA00
451dul_B_G174_A175AAAAA00970.12 AA00
461dul_B_A175_G176AAAAA00950.09 AA00
471dul_B_G176_C177AAAAA00940.12 AA00
481dul_B_C177_CCC178AAAAA00870.20 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N