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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF THE CONSERVED DOMAIN IV OF E. COLI 4.5S RNA

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011duh_A_C31_U32AAAAA00780.15 AA00
021duh_A_U32_C33AAAAA00900.11 AA00
031duh_A_C33_U34AAAAA00730.15 AA00
041duh_A_U34_G35AAAAA00830.12 AA00
051duh_A_G35_U36AAAAA08870.20 AA08
061duh_A_U36_U37AAAAA00860.14 AA00
071duh_A_U37_U38AAAAA00160.33 AA00
081duh_A_U38_A39NANNANT01.25 AA11
091duh_A_A39_C40NANNANT00.55 AA10
101duh_A_C40_C41NANNANT00.49 OP05
111duh_A_C41_A42NANNANT00.83 IC06
121duh_A_A42_G43NANNANT00.38 OP16
131duh_A_G43_G44AAAAA00740.21 AA00
141duh_A_G44_U45AAAAA00870.24 AA00
151duh_A_U45_C46AAAAA08810.29 AA08
161duh_A_C46_A47AAuAA13860.28 AA13
171duh_A_A47_G48AAAAA08440.53 AA08
181duh_A_G48_G49AAAAA08660.39 AA08
191duh_A_G49_U50AAAAA00710.33 AA00
201duh_A_U50_C51AAAAA00790.15 AA00
211duh_A_C51_C52AAAAA00590.33 AA00
221duh_A_C52_G53AAwAA05600.35 AA05
231duh_A_G53_G54NANNANT00.62 AA11
241duh_A_G54_A55NANNANT00.48 OP10
251duh_A_A55_A56AAAAA00830.19 AA00
261duh_A_A56_G57AAAAA08630.40 AA08
271duh_A_G57_G58AAAAA00700.20 AA00
281duh_A_G58_A59AAAAA00680.24 AA00
291duh_A_A59_A60AAAAA08680.32 AA08
301duh_A_A60_G61AAAAA00510.41 AA00
311duh_A_G61_C62AAuAA12690.35 AA12
321duh_A_C62_A63AAAAA00640.29 AA00
331duh_A_A63_G64AAAAA00250.47 AA00
341duh_A_G64_C65AAAAA00770.20 AA00
351duh_A_C65_C66AAAAA00780.22 AA00
361duh_A_C66_A67AAAAA00830.26 AA00
371duh_A_A67_A68AAAAA00760.22 AA00
381duh_A_A68_G69AAwAA01490.26 AA01
391duh_A_G69_G70AAAAA00220.30 AA00
401duh_A_G70_C71AAAAA00750.17 AA00
411duh_A_C71_A72AAAAA00810.20 AA00
421duh_A_A72_G73AAAAA00710.24 AA00
431duh_A_G73_A74AAAAA00820.20 AA00
441duh_A_A74_PGP75AAAAA00150.32 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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