Conformers:
ABBIImiBZICOPNSYNN
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NMR STUDY OF DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH ACTINOMYCIN D, MINIMIZED AVERAGE STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1dsc_A_DG1_DA2 | B-A | BA05 | 33 | 0.48 |
| 02 | 1dsc_A_DA2_DA3 | NAN | NANT | 0 | 0.61 |
| 03 | 1dsc_A_DA3_DG4 | NAN | NANT | 0 | 1.01 |
| 04 | 1dsc_A_DG4_DC5 | NAN | NANT | 0 | 0.65 |
| 05 | 1dsc_A_DC5_DT6 | NAN | NANT | 0 | 0.47 |
| 06 | 1dsc_A_DT6_DT7 | NAN | NANT | 0 | 0.63 |
| 07 | 1dsc_A_DT7_DC8 | B-A | BA01 | 9 | 0.36 |
| 08 | 1dsc_B_DG9_DA10 | B-A | BA05 | 32 | 0.48 |
| 09 | 1dsc_B_DA10_DA11 | BBw | BB16 | 11 | 0.74 |
| 10 | 1dsc_B_DA11_DG12 | NAN | NANT | 0 | 1.09 |
| 11 | 1dsc_B_DG12_DC13 | NAN | NANT | 0 | 0.59 |
| 12 | 1dsc_B_DC13_DT14 | NAN | NANT | 0 | 0.49 |
| 13 | 1dsc_B_DT14_DT15 | BBB | BB01 | 10 | 0.43 |
| 14 | 1dsc_B_DT15_DC16 | B-A | BA01 | 9 | 0.36 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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