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Conformers: ABBIImiBZICOPNSYNN
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U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX

Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011drz_B_G101_G102AAAAA00440.29 AA00
021drz_B_G102_C103AAAAA00890.14 AA00
031drz_B_C103_C104AAAAA00910.17 AA00
041drz_B_C104_G105AAAAA00820.14 AA00
051drz_B_G105_G106AAAAA00950.11 AA00
061drz_B_G106_C107AAAAA00940.12 AA00
071drz_B_C107_A108AAAAA00830.33 AA00
081drz_B_A108_U109AAAAA00490.31 AA00
091drz_B_U109_G110NANNANT00.33 OP29
101drz_B_G110_G111AAAAA00480.33 AA00
111drz_B_G111_U112AAAAA00940.10 AA00
121drz_B_U112_C113AAAAA00860.20 AA00
131drz_B_C113_C114AAAAA00770.20 AA00
141drz_B_C114_C115AAAAA00900.14 AA00
151drz_B_C115_A116AAAAA00800.20 AA00
161drz_B_A116_G117AAAAA00910.19 AA00
171drz_B_G117_C118AAAAA00900.20 AA00
181drz_B_C118_C119AAAAA00810.24 AA00
191drz_B_C119_U120AAAAA08370.39 AA08
201drz_B_U120_C121NANNANT01.02 OP29
211drz_B_C121_C122NANNANT00.65 AA01
221drz_B_C122_U123NANNANT02.07 BB2S
231drz_B_U123_C124NANNANT01.49 AB02
241drz_B_C124_G125NANNANT00.43 ZZ1S
251drz_B_G125_C126NANNANT02.05 OP29
261drz_B_C126_U127NANNANT02.12 OP02
271drz_B_U127_G128NANNANT01.16 OP17
281drz_B_G128_G129AAAAA08730.23 AA08
291drz_B_G129_C130AAAAA00890.15 AA00
301drz_B_C130_G131NANNANT00.47 OP30
311drz_B_G131_C132AAAAA00570.24 AA00
321drz_B_C132_C133AAAAA00900.26 AA00
331drz_B_C133_G134AAAAA00890.16 AA00
341drz_B_G134_G135AAAAA00920.17 AA00
351drz_B_G135_C136AAAAA00930.15 AA00
361drz_B_C136_U137AAAAA00740.31 AA00
371drz_B_U137_G138AAuAA12830.21 AA12
381drz_B_G138_G139AAAAA00910.16 AA00
391drz_B_G139_G140AAAAA00920.16 AA00
401drz_B_G140_C141NANNANT01.07 OP08
411drz_B_C141_A142NANNANT01.15 AA12
421drz_B_A142_A143AAAAA00540.16 AA00
431drz_B_A143_C144AAAAA00750.16 AA00
441drz_B_C144_A145AAAAA00830.16 AA00
451drz_B_A145_C146AAAAA00900.15 AA00
461drz_B_C146_C147AAAAA00940.18 AA00
471drz_B_C147_A148AAAAA00710.30 AA00
481drz_B_A148_U149AAAAA00950.17 AA00
491drz_B_U149_U150ICLIC02860.10 IC02
501drz_B_U150_G151ZZZZZ02370.60 ZZ02
511drz_B_G151_C152NANNANT00.77 IC02
521drz_B_C152_A153NANNANT01.00 AA12
531drz_B_A153_C154AAAAA00780.20 AA00
541drz_B_C154_U155NANNANT00.47 OP21
551drz_B_U155_C156NANNANT00.38 OP26
561drz_B_C156_C157AAAAA00640.32 AA00
571drz_B_C157_G158NANNANT01.60 OP17
581drz_B_G158_G159AAAAA00900.17 AA00
591drz_B_G159_U160AAAAA00980.07 AA00
601drz_B_U160_G161AAAAA00860.20 AA00
611drz_B_G161_G162A-BAB01440.26 AB01
621drz_B_G162_C163NANNANT01.60 IC01
631drz_B_C163_G164NANNANT02.06 OP04
641drz_B_G164_A165NANNANT01.61 OP01
651drz_B_A165_A166AAAAA09600.28 AA09
661drz_B_A166_U167NANNANT00.69 IC07
671drz_B_U167_G168NANNANT00.47 BA10
681drz_B_G168_G169AAAAA00960.09 AA00
691drz_B_G169_G170AAAAA00950.21 AA00
701drz_B_G170_A171AAAAA00860.13 AA00
711drz_B_A171_C172AAAAA00810.17 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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