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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE

Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011dp7_D_DC1_DG2BB2BB07750.32 BB07
021dp7_D_DG2_BRU3B-ABA05870.19 BA05
031dp7_D_BRU3_DT4BBBBB01240.31 BB01
041dp7_D_DT4_DA5BBBBB00800.24 BB00
051dp7_D_DA5_DC6BBBBB00690.23 BB00
061dp7_D_DC6_DC7B-ABA13710.23 BA13
071dp7_D_DC7_DA8AAAAA00830.19 AA00
081dp7_D_DA8_BRU9AAAAA00830.18 AA00
091dp7_D_BRU9_DG10A-BAB05820.18 AB05
101dp7_D_DG10_DG11BBBBB00420.40 BB00
111dp7_D_DG11_DT12BBBBB00360.36 BB00
121dp7_D_DT12_DA13BBBBB00700.31 BB00
131dp7_D_DA13_DA14BBBBB00790.18 BB00
141dp7_D_DA14_DC15B12BB04750.31 BB04
151dp7_D_DC15_DG16BBBBB00620.55 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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