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Conformers: ABBIImiBZICOPNSYNN
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RNA/DNA DODECAMER R(G)D(CGTATACGC) WITH MAGNESIUM BINDING SITES

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011dnx_A_G1_DC2AAAAA00620.23 AA00
021dnx_A_DC2_DG3AAwAA01620.13 AA01
031dnx_A_DG3_DT4AAAAA00260.30 AA00
041dnx_A_DT4_DA5AAwAA01360.32 AA01
051dnx_A_DA5_DT6AAAAA00810.11 AA00
061dnx_A_DT6_DA7AAAAA00770.20 AA00
071dnx_A_DA7_DC8AAwAA01690.16 AA01
081dnx_A_DC8_DG9AAAAA00900.19 AA00
091dnx_A_DG9_DC10AAAAA00910.15 AA00
101dnx_B_G11_DC12AAAAA00870.17 AA00
111dnx_B_DC12_DG13AAwAA01890.12 AA01
121dnx_B_DG13_DT14AAAAA00610.24 AA00
131dnx_B_DT14_DA15AAAAA00770.16 AA00
141dnx_B_DA15_DT16AAAAA00910.14 AA00
151dnx_B_DT16_DA17AAAAA00610.29 AA00
161dnx_B_DA17_DC18AAAAA00740.22 AA00
171dnx_B_DC18_DG19AAwAA01670.28 AA01
181dnx_B_DG19_DC20AAAAA00420.38 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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