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Conformers: ABBIImiBZICOPNSYNN
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RNA/DNA DODECAMER R(GC)D(GTATACGC) WITH MAGNESIUM BINDING SITES

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011dnt_A_G1_C2NANNANT00.41 AA00
021dnt_A_C2_DG3AAAAA00560.22 AA00
031dnt_A_DG3_DT4AAAAA00480.27 AA00
041dnt_A_DT4_DA5AAwAA01710.29 AA01
051dnt_A_DA5_DT6AAAAA00910.16 AA00
061dnt_A_DT6_DA7AAAAA00860.14 AA00
071dnt_A_DA7_DC8AAAAA00890.11 AA00
081dnt_A_DC8_DG9AAAAA00890.14 AA00
091dnt_A_DG9_DC10AAAAA00830.18 AA00
101dnt_B_G11_C12AAAAA00620.17 AA00
111dnt_B_C12_DG13AAAAA00650.23 AA00
121dnt_B_DG13_DT14AAAAA00880.15 AA00
131dnt_B_DT14_DA15AAAAA00890.14 AA00
141dnt_B_DA15_DT16AAAAA00660.20 AA00
151dnt_B_DT16_DA17AAAAA00760.17 AA00
161dnt_B_DA17_DC18A-BAB05430.12 AB05
171dnt_B_DC18_DG19NANNANT00.37 BA08
181dnt_B_DG19_DC20AAAAA04600.40 AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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