Conformers:
ABBIImiBZICOPNSYNN
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THE X-RAY STRUCTURE OF THE DNASE I-D(GGTATACC)2 COMPLEX AT 2.3 ANGSTROMS RESOLUTION
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 13 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1dnk_B_DG301_DG302 | AAA | AA04 | 85 | 0.24 |
| 02 | 1dnk_B_DG302_DT303 | AAA | AA08 | 28 | 0.17 |
| 03 | 1dnk_B_DT303_DA304 | AAA | AA00 | 66 | 0.30 |
| 04 | 1dnk_B_DA304_DT305 | AAA | AA04 | 28 | 0.38 |
| 05 | 1dnk_B_DT305_DA306 | NAN | NANT | 0 | 0.60 |
| 06 | 1dnk_B_DA306_DC307 | BBB | BB00 | 38 | 0.42 |
| 07 | 1dnk_C_DG309_DG310 | NAN | NANT | 0 | 0.71 |
| 08 | 1dnk_C_DG310_DT311 | BBB | BB00 | 54 | 0.21 |
| 09 | 1dnk_C_DT311_DA312 | BBB | BB00 | 77 | 0.23 |
| 10 | 1dnk_C_DA312_DT313 | B-A | BA09 | 20 | 0.30 |
| 11 | 1dnk_C_DT313_DA314 | NAN | NANT | 0 | 0.32 |
| 12 | 1dnk_C_DA314_DC315 | NAN | NANT | 0 | 0.52 |
| 13 | 1dnk_C_DC315_DC316 | A-B | AB04 | 49 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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