Conformers:
ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1diz_C_DG1_DA2 | B12 | BB04 | 83 | 0.21 |
| 02 | 1diz_C_DA2_DC3 | NAN | NANT | 0 | 0.34 |
| 03 | 1diz_C_DC3_DA4 | BBB | BB00 | 88 | 0.18 |
| 04 | 1diz_C_DA4_DT5 | BBB | BB00 | 93 | 0.22 |
| 05 | 1diz_C_DT5_DG6 | BBB | BB00 | 94 | 0.18 |
| 06 | 1diz_C_DG6_DA7 | BBB | BB00 | 72 | 0.34 |
| 07 | 1diz_C_DT9_DG10 | BBB | BB00 | 48 | 0.30 |
| 08 | 1diz_C_DG10_DC11 | BBB | BB00 | 88 | 0.26 |
| 09 | 1diz_C_DC11_DC12 | B12 | BB04 | 87 | 0.18 |
| 10 | 1diz_C_DC12_DT13 | BBB | BB00 | 48 | 0.39 |
| 11 | 1diz_D_DG14_DG15 | BBB | BB00 | 84 | 0.17 |
| 12 | 1diz_D_DG15_DC16 | BBB | BB00 | 87 | 0.25 |
| 13 | 1diz_D_DC16_DA17 | BBB | BB00 | 71 | 0.26 |
| 14 | 1diz_D_DA17_DA18 | BBw | BB02 | 38 | 0.29 |
| 15 | 1diz_D_DA18_DT19 | NAN | NANT | 0 | 0.70 |
| 16 | 1diz_D_DT19_DC20 | BBB | BB00 | 82 | 0.28 |
| 17 | 1diz_D_DC20_DA21 | BBB | BB00 | 82 | 0.18 |
| 18 | 1diz_D_DA21_DT22 | BBw | BB02 | 78 | 0.12 |
| 19 | 1diz_D_DT22_DG23 | BBB | BB00 | 89 | 0.12 |
| 20 | 1diz_D_DG23_DT24 | BBw | BB02 | 73 | 0.24 |
| 21 | 1diz_D_DT24_DC25 | BBB | BB00 | 54 | 0.30 |
| 22 | 1diz_D_DC25_DA26 | BBw | BB11 | 59 | 0.47 |
| 23 | 1diz_E_DG1_DA2 | BBB | BB00 | 72 | 0.27 |
| 24 | 1diz_E_DA2_DC3 | NAN | NANT | 0 | 0.82 |
| 25 | 1diz_E_DC3_DA4 | BBB | BB00 | 36 | 0.39 |
| 26 | 1diz_E_DA4_DT5 | BBB | BB00 | 88 | 0.25 |
| 27 | 1diz_E_DT5_DG6 | BBB | BB00 | 93 | 0.19 |
| 28 | 1diz_E_DG6_DA7 | BBB | BB00 | 71 | 0.32 |
| 29 | 1diz_E_DT9_DG10 | BBB | BB00 | 65 | 0.27 |
| 30 | 1diz_E_DG10_DC11 | BBB | BB00 | 86 | 0.28 |
| 31 | 1diz_E_DC11_DC12 | B12 | BB04 | 59 | 0.19 |
| 32 | 1diz_E_DC12_DT13 | BBB | BB00 | 48 | 0.41 |
| 33 | 1diz_F_DG14_DG15 | BBB | BB00 | 90 | 0.18 |
| 34 | 1diz_F_DG15_DC16 | BBB | BB00 | 51 | 0.37 |
| 35 | 1diz_F_DC16_DA17 | BBB | BB00 | 67 | 0.27 |
| 36 | 1diz_F_DA17_DA18 | BBw | BB02 | 28 | 0.32 |
| 37 | 1diz_F_DA18_DT19 | NAN | NANT | 0 | 0.70 |
| 38 | 1diz_F_DT19_DC20 | BBB | BB00 | 80 | 0.24 |
| 39 | 1diz_F_DC20_DA21 | BBB | BB00 | 95 | 0.15 |
| 40 | 1diz_F_DA21_DT22 | BBw | BB02 | 80 | 0.16 |
| 41 | 1diz_F_DT22_DG23 | BBB | BB00 | 79 | 0.19 |
| 42 | 1diz_F_DG23_DT24 | BBw | BB03 | 59 | 0.43 |
| 43 | 1diz_F_DT24_DC25 | BBB | BB00 | 43 | 0.52 |
| 44 | 1diz_F_DC25_DA26 | B12 | BB04 | 30 | 0.23 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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