Conformers:
ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONS
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1di2_C_G1_G2 | AAA | AA00 | 93 | 0.10 |
| 02 | 1di2_C_G2_C3 | AAA | AA00 | 95 | 0.15 |
| 03 | 1di2_C_C3_G4 | AAA | AA00 | 85 | 0.30 |
| 04 | 1di2_C_G4_C5 | AAA | AA00 | 90 | 0.20 |
| 05 | 1di2_C_C5_G6 | AAw | AA01 | 93 | 0.16 |
| 06 | 1di2_C_G6_C7 | AAA | AA00 | 83 | 0.09 |
| 07 | 1di2_C_C7_G8 | AAA | AA00 | 87 | 0.15 |
| 08 | 1di2_C_G8_C9 | AAA | AA00 | 93 | 0.07 |
| 09 | 1di2_C_C9_C10 | AAA | AA00 | 90 | 0.20 |
| 10 | 1di2_D_G11_G12 | AAA | AA00 | 73 | 0.22 |
| 11 | 1di2_D_G12_C13 | AAA | AA00 | 95 | 0.12 |
| 12 | 1di2_D_C13_G14 | AAA | AA00 | 91 | 0.23 |
| 13 | 1di2_D_G14_C15 | AAA | AA00 | 97 | 0.16 |
| 14 | 1di2_D_C15_G16 | AAA | AA00 | 88 | 0.20 |
| 15 | 1di2_D_G16_C17 | AAA | AA00 | 86 | 0.15 |
| 16 | 1di2_D_C17_G18 | AAA | AA00 | 91 | 0.15 |
| 17 | 1di2_D_G18_C19 | AAA | AA00 | 95 | 0.14 |
| 18 | 1di2_D_C19_C20 | AAA | AA00 | 94 | 0.13 |
| 19 | 1di2_E_G21_G22 | AAA | AA00 | 67 | 0.19 |
| 20 | 1di2_E_G22_C23 | AAA | AA00 | 95 | 0.10 |
| 21 | 1di2_E_C23_G24 | AAA | AA00 | 86 | 0.21 |
| 22 | 1di2_E_G24_C25 | AAA | AA00 | 94 | 0.12 |
| 23 | 1di2_E_C25_G26 | AAA | AA00 | 91 | 0.14 |
| 24 | 1di2_E_G26_C27 | AAA | AA00 | 90 | 0.11 |
| 25 | 1di2_E_C27_G28 | AAA | AA00 | 87 | 0.17 |
| 26 | 1di2_E_G28_C29 | AAA | AA00 | 94 | 0.11 |
| 27 | 1di2_E_C29_C30 | AAA | AA00 | 90 | 0.12 |
| 28 | 1di2_G_G41_G42 | AAA | AA00 | 67 | 0.25 |
| 29 | 1di2_G_G42_C43 | AAA | AA00 | 90 | 0.18 |
| 30 | 1di2_G_C43_G44 | AAA | AA04 | 84 | 0.24 |
| 31 | 1di2_G_G44_C45 | AAA | AA00 | 47 | 0.38 |
| 32 | 1di2_G_C45_G46 | AAA | AA00 | 63 | 0.32 |
| 33 | 1di2_G_G46_C47 | AAA | AA00 | 76 | 0.20 |
| 34 | 1di2_G_C47_G48 | AAA | AA00 | 77 | 0.14 |
| 35 | 1di2_G_G48_C49 | AAA | AA00 | 71 | 0.20 |
| 36 | 1di2_G_C49_C50 | AAA | AA00 | 61 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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