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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUTION

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011dfu_M_C91_C92AAAAA00810.12 AA00
021dfu_M_C92_C93AAAAA00920.15 AA00
031dfu_M_C93_A94AAAAA00820.17 AA00
041dfu_M_A94_U95AAAAA00880.14 AA00
051dfu_M_U95_G96AAAAA00790.15 AA00
061dfu_M_G96_C97AAAAA04670.38 AA04
071dfu_M_C97_G98AAAAA00350.42 AA00
081dfu_M_G98_A99NANNANT01.33 AA11
091dfu_M_A99_G100AAAAA00240.53 AA00
101dfu_M_G100_A101AAAAA00710.32 AA00
111dfu_M_A101_G102AAAAA08840.25 AA08
121dfu_M_G102_U103AAAAA00800.24 AA00
131dfu_M_U103_A104AAAAA00920.16 AA00
141dfu_M_A104_G105AAAAA08350.44 AA08
151dfu_M_G105_G106AAAAA00860.18 AA00
161dfu_M_G106_G107AAAAA00850.17 AA00
171dfu_M_G107_A108NANNANT01.88 OP29
181dfu_M_A108_C109NANNANT01.79 ZZ02
191dfu_N_U68_G69NANNANT01.49 AA01
201dfu_N_G69_C70NANNANT01.87 OPS1
211dfu_N_C70_C71AAAAA00830.20 AA00
221dfu_N_C71_G72AAAAA00290.49 AA00
231dfu_N_G72_A73OPNOP08860.17 OP08
241dfu_N_A73_U74AAAAA08340.48 AA08
251dfu_N_U74_G75AAAAA00760.28 AA00
261dfu_N_G75_G76AAAAA00910.16 AA00
271dfu_N_G76_U77AAAAA00900.21 AA00
281dfu_N_U77_A78AAAAA00820.24 AA00
291dfu_N_A78_G79AAAAA00130.44 AA00
301dfu_N_G79_U80AAAAA00860.29 AA00
311dfu_N_U80_G81AAuAA12840.20 AA12
321dfu_N_G81_U82AAAAA00880.19 AA00
331dfu_N_U82_G83AAAAA00870.16 AA00
341dfu_N_G83_G84AAAAA00890.17 AA00
351dfu_N_G84_G85AAAAA00840.17 AA00
361dfu_N_G85_G86AAAAA00810.26 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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