Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1dfm_C_DT1_DA2 | BBB | BB00 | 51 | 0.33 |
| 02 | 1dfm_C_DA2_DT3 | BBw | BB02 | 63 | 0.30 |
| 03 | 1dfm_C_DT3_DT4 | BBB | BB00 | 46 | 0.26 |
| 04 | 1dfm_C_DT4_DA5 | B12 | BB04 | 46 | 0.18 |
| 05 | 1dfm_C_DA5_DT6 | miB | BB12 | 83 | 0.37 |
| 06 | 1dfm_C_DT6_DA7 | BBw | BB16 | 72 | 0.42 |
| 07 | 1dfm_C_DA7_DG8 | BBB | BB00 | 82 | 0.19 |
| 08 | 1dfm_C_DG8_DA9 | BBB | BB00 | 79 | 0.24 |
| 09 | 1dfm_C_DA9_DT10 | BBB | BB00 | 55 | 0.35 |
| 10 | 1dfm_C_DT10_DC11 | NAN | NANT | 0 | 0.50 |
| 11 | 1dfm_C_DC11_DT12 | NAN | NANT | 0 | 0.18 |
| 12 | 1dfm_C_DT12_DA13 | BBB | BB00 | 71 | 0.25 |
| 13 | 1dfm_C_DA13_DT14 | BBB | BB00 | 36 | 0.28 |
| 14 | 1dfm_C_DT14_DA15 | BBB | BB00 | 66 | 0.37 |
| 15 | 1dfm_C_DA15_DA16 | BBB | BB00 | 52 | 0.22 |
| 16 | 1dfm_D_DT17_DA18 | NAN | NANT | 0 | 0.50 |
| 17 | 1dfm_D_DA18_DT19 | BBB | BB00 | 52 | 0.33 |
| 18 | 1dfm_D_DT19_DT20 | BBB | BB00 | 44 | 0.28 |
| 19 | 1dfm_D_DT20_DA21 | BBB | BB00 | 73 | 0.23 |
| 20 | 1dfm_D_DA21_DT22 | miB | BB12 | 66 | 0.44 |
| 21 | 1dfm_D_DT22_DA23 | BBw | BB16 | 74 | 0.41 |
| 22 | 1dfm_D_DA23_DG24 | BBB | BB00 | 79 | 0.20 |
| 23 | 1dfm_D_DG24_DA25 | BBB | BB00 | 84 | 0.22 |
| 24 | 1dfm_D_DA25_DT26 | BBB | BB00 | 54 | 0.38 |
| 25 | 1dfm_D_DT26_DC27 | NAN | NANT | 0 | 0.54 |
| 26 | 1dfm_D_DC27_DT28 | NAN | NANT | 0 | 0.19 |
| 27 | 1dfm_D_DT28_DA29 | BBB | BB00 | 74 | 0.25 |
| 28 | 1dfm_D_DA29_DT30 | BBB | BB00 | 38 | 0.25 |
| 29 | 1dfm_D_DT30_DA31 | B12 | BB04 | 76 | 0.21 |
| 30 | 1dfm_D_DA31_DA32 | miB | BB13 | 68 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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