Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
STRUCTURE OF A FOUR-WAY JUNCTION IN AN INVERTED REPEAT SEQUENCE.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1dcw_A_DC1_DC2 | BBw | BB16 | 45 | 0.46 |
| 02 | 1dcw_A_DC2_DG3 | BB2 | BB07 | 48 | 0.30 |
| 03 | 1dcw_A_DG3_DG4 | BB2 | BB07 | 65 | 0.27 |
| 04 | 1dcw_A_DG4_DT5 | BBB | BB00 | 56 | 0.31 |
| 05 | 1dcw_A_DT5_DA6 | NAN | NANT | 0 | 0.29 |
| 06 | 1dcw_A_DA6_DC7 | BB2 | BB07 | 24 | 0.30 |
| 07 | 1dcw_A_DC7_DC8 | BBB | BB00 | 22 | 0.41 |
| 08 | 1dcw_A_DC8_DG9 | BB2 | BB07 | 64 | 0.24 |
| 09 | 1dcw_A_DG9_DG10 | B12 | BB04 | 21 | 0.40 |
| 10 | 1dcw_B_DC1_DC2 | BBw | BB16 | 55 | 0.47 |
| 11 | 1dcw_B_DC2_DG3 | BB2 | BB07 | 61 | 0.25 |
| 12 | 1dcw_B_DG3_DG4 | BB2 | BB07 | 77 | 0.20 |
| 13 | 1dcw_B_DG4_DT5 | BBB | BB00 | 80 | 0.15 |
| 14 | 1dcw_B_DT5_DA6 | B12 | BB04 | 75 | 0.20 |
| 15 | 1dcw_B_DA6_DC7 | OPN | OP20 | 86 | 0.22 |
| 16 | 1dcw_B_DC7_DC8 | BBw | BB16 | 41 | 0.26 |
| 17 | 1dcw_B_DC8_DG9 | BB2 | BB07 | 53 | 0.29 |
| 18 | 1dcw_B_DG9_DG10 | BB2 | BB07 | 75 | 0.21 |
| 19 | 1dcw_C_DC1_DC2 | BBw | BB16 | 50 | 0.45 |
| 20 | 1dcw_C_DC2_DG3 | BB2 | BB07 | 46 | 0.29 |
| 21 | 1dcw_C_DG3_DG4 | BB2 | BB07 | 67 | 0.29 |
| 22 | 1dcw_C_DG4_DT5 | BBB | BB00 | 45 | 0.33 |
| 23 | 1dcw_C_DT5_DA6 | B12 | BB04 | 17 | 0.42 |
| 24 | 1dcw_C_DA6_DC7 | NAN | NANT | 0 | 0.56 |
| 25 | 1dcw_C_DC7_DC8 | NAN | NANT | 0 | 0.43 |
| 26 | 1dcw_C_DC8_DG9 | BB2 | BB07 | 64 | 0.26 |
| 27 | 1dcw_C_DG9_DG10 | BB2 | BB07 | 45 | 0.28 |
| 28 | 1dcw_D_DC1_DC2 | BBw | BB16 | 63 | 0.41 |
| 29 | 1dcw_D_DC2_DG3 | BB2 | BB07 | 51 | 0.25 |
| 30 | 1dcw_D_DG3_DG4 | BB2 | BB07 | 73 | 0.22 |
| 31 | 1dcw_D_DG4_DT5 | BBB | BB00 | 72 | 0.18 |
| 32 | 1dcw_D_DT5_DA6 | B12 | BB04 | 53 | 0.22 |
| 33 | 1dcw_D_DA6_DC7 | OPN | OP20 | 88 | 0.20 |
| 34 | 1dcw_D_DC7_DC8 | BBw | BB16 | 61 | 0.25 |
| 35 | 1dcw_D_DC8_DG9 | BB2 | BB07 | 49 | 0.26 |
| 36 | 1dcw_D_DG9_DG10 | BB2 | BB07 | 40 | 0.25 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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