Conformers:
ABBIImiBZICOPNSYNN
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RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1dc1_W_DA1_DT2 | NAN | NANT | 0 | 0.94 |
| 02 | 1dc1_W_DT2_DA3 | A-B | AB01 | 73 | 0.43 |
| 03 | 1dc1_W_DA3_DC4 | NAN | NANT | 0 | 0.36 |
| 04 | 1dc1_W_DC4_DT5 | AAA | AA00 | 73 | 0.22 |
| 05 | 1dc1_W_DT5_DC6 | A-B | AB05 | 84 | 0.24 |
| 06 | 1dc1_W_DC6_DG7 | B12 | BB04 | 68 | 0.27 |
| 07 | 1dc1_W_DG7_DA8 | NAN | NANT | 0 | 0.60 |
| 08 | 1dc1_W_DA8_DG9 | AAw | AA01 | 57 | 0.32 |
| 09 | 1dc1_W_DG9_DT10 | AAA | AA00 | 43 | 0.35 |
| 10 | 1dc1_W_DT10_DA11 | A-B | AB01 | 69 | 0.27 |
| 11 | 1dc1_W_DA11_DT12 | BBB | BB00 | 60 | 0.32 |
| 12 | 1dc1_C_DT1_DA2 | BB2 | BB07 | 39 | 0.46 |
| 13 | 1dc1_C_DA2_DT3 | B-A | BA05 | 67 | 0.29 |
| 14 | 1dc1_C_DT3_DA4 | A-B | AB03 | 72 | 0.27 |
| 15 | 1dc1_C_DA4_DC5 | NAN | NANT | 0 | 0.38 |
| 16 | 1dc1_C_DC5_DT6 | AAA | AA00 | 73 | 0.23 |
| 17 | 1dc1_C_DT6_DC7 | A-B | AB05 | 87 | 0.22 |
| 18 | 1dc1_C_DC7_DG8 | B12 | BB04 | 74 | 0.24 |
| 19 | 1dc1_C_DG8_DA9 | NAN | NANT | 0 | 0.59 |
| 20 | 1dc1_C_DA9_DG10 | AAw | AA01 | 56 | 0.33 |
| 21 | 1dc1_C_DG10_DT11 | AAA | AA00 | 54 | 0.33 |
| 22 | 1dc1_C_DT11_DA12 | A-B | AB01 | 77 | 0.23 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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