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Conformers: ABBIImiBZICOPNSYNN
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STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA (MAGNESIUM FREE) AT 1 ANGSTROM RESOLUTION

Results of the assignment of 10 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011d48_A_DC1_DG2ZZZZZ1S860.14 ZZ1S
021d48_A_DG2_DC3ZZZZZS1870.14 ZZS1
031d48_A_DC3_DG4ZZZZZ1S510.16 ZZ1S
041d48_A_DG4_DC5ZZZZZS1350.31 ZZS1
051d48_A_DC5_DG6ZZZZZ2S860.12 ZZ2S
061d48_B_DC7_DG8ZZZZZ1S800.09 ZZ1S
071d48_B_DG8_DC9ZZZZZS1680.31 ZZS1
081d48_B_DC9_DG10ZZZZZ1S870.12 ZZ1S
091d48_B_DG10_DC11NANNANT00.26 ZZS1
101d48_B_DC11_DG12ZZZZZ2S900.11 ZZ2S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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