Conformers:
ABBIImiBZICOPNSYNN
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USE OF AN N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE TO FACILITATE CRYSTALLIZATION AND ANALYSIS OF A PSEUDO-16-MER DNA MOLECULE CONTAINING G-A MISPAIRS
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1d1u_B_DC1_DT2 | B-A | BA01 | 12 | 0.28 |
| 02 | 1d1u_B_DT2_DC3 | AAw | AA10 | 37 | 0.38 |
| 03 | 1d1u_B_DC3_DG4 | AAA | AA08 | 66 | 0.35 |
| 04 | 1d1u_B_DG4_DT5 | AAA | AA00 | 55 | 0.29 |
| 05 | 1d1u_B_DT5_DG6 | AAA | AA00 | 16 | 0.28 |
| 06 | 1d1u_C_DA7_DC8 | miB | BB13 | 76 | 0.26 |
| 07 | 1d1u_C_DC8_DG9 | BBw | BB16 | 96 | 0.00 |
| 08 | 1d1u_C_DG9_DG10 | BB2 | BB07 | 54 | 0.34 |
| 09 | 1d1u_C_DG10_DC11 | BBB | BB00 | 62 | 0.29 |
| 10 | 1d1u_C_DC11_DA12 | BBw | BB11 | 79 | 0.35 |
| 11 | 1d1u_C_DA12_DC13 | NAN | NANT | 0 | 0.60 |
| 12 | 1d1u_C_DC13_DG14 | BBB | BB00 | 78 | 0.26 |
| 13 | 1d1u_C_DG14_DA15 | BBB | BB00 | 96 | 0.12 |
| 14 | 1d1u_C_DA15_DG16 | B12 | BB04 | 73 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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