Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1d0e_E_DT1_DT2 | NAN | NANT | 0 | 0.90 |
| 02 | 1d0e_E_DT2_DT3 | NAN | NANT | 0 | 1.65 |
| 03 | 1d0e_E_DT3_DC4 | NAN | NANT | 0 | 1.31 |
| 04 | 1d0e_E_DC4_DA5 | BBB | BB00 | 56 | 0.28 |
| 05 | 1d0e_E_DA5_DT6 | BBw | BB02 | 64 | 0.23 |
| 06 | 1d0e_E_DT6_DG7 | BB2 | BB07 | 61 | 0.33 |
| 07 | 1d0e_E_DG7_DC8 | BBB | BB00 | 95 | 0.09 |
| 08 | 1d0e_E_DC8_DA9 | miB | BB10 | 73 | 0.25 |
| 09 | 1d0e_E_DA9_DT10 | NAN | NANT | 0 | 0.74 |
| 10 | 1d0e_E_DT10_DG11 | BBB | BB00 | 44 | 0.34 |
| 11 | 1d0e_F_DT1_DT2 | NAN | NANT | 0 | 1.91 |
| 12 | 1d0e_F_DT2_DT3 | NAN | NANT | 0 | 1.68 |
| 13 | 1d0e_F_DT3_DC4 | NAN | NANT | 0 | 0.95 |
| 14 | 1d0e_F_DC4_DA5 | BBw | BB02 | 33 | 0.38 |
| 15 | 1d0e_F_DA5_DT6 | BBB | BB00 | 59 | 0.26 |
| 16 | 1d0e_F_DT6_DG7 | BB2 | BB07 | 67 | 0.38 |
| 17 | 1d0e_F_DG7_DC8 | NAN | NANT | 0 | 0.32 |
| 18 | 1d0e_F_DC8_DA9 | NAN | NANT | 0 | 0.70 |
| 19 | 1d0e_F_DA9_DT10 | BBB | BB00 | 81 | 0.33 |
| 20 | 1d0e_F_DT10_DG11 | B12 | BB04 | 77 | 0.17 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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