Conformers:
ABBIImiBZICOPNSYNN
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NMR STRUCTURE OF THE GAACTGGTTC/TRI-IMIDAZOLE POLYAMIDE COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1cyz_A_DG1_DA2 | BBB | BB00 | 40 | 0.43 |
| 02 | 1cyz_A_DA2_DA3 | BBB | BB00 | 65 | 0.28 |
| 03 | 1cyz_A_DA3_DC4 | B12 | BB04 | 60 | 0.37 |
| 04 | 1cyz_A_DC4_DT5 | BBB | BB00 | 24 | 0.58 |
| 05 | 1cyz_A_DT5_DG6 | NAN | NANT | 0 | 0.64 |
| 06 | 1cyz_A_DG6_DG7 | B-A | BA05 | 57 | 0.36 |
| 07 | 1cyz_A_DG7_DT8 | NAN | NANT | 0 | 0.53 |
| 08 | 1cyz_A_DT8_DT9 | A-B | AB05 | 64 | 0.38 |
| 09 | 1cyz_A_DT9_DC10 | BBB | BB00 | 76 | 0.29 |
| 10 | 1cyz_B_DG16_DA17 | BBB | BB00 | 41 | 0.43 |
| 11 | 1cyz_B_DA17_DA18 | BBB | BB00 | 65 | 0.28 |
| 12 | 1cyz_B_DA18_DC19 | B12 | BB04 | 60 | 0.37 |
| 13 | 1cyz_B_DC19_DT20 | BBB | BB00 | 23 | 0.58 |
| 14 | 1cyz_B_DT20_DG21 | NAN | NANT | 0 | 0.64 |
| 15 | 1cyz_B_DG21_DG22 | B-A | BA05 | 57 | 0.36 |
| 16 | 1cyz_B_DG22_DT23 | NAN | NANT | 0 | 0.53 |
| 17 | 1cyz_B_DT23_DT24 | A-B | AB05 | 64 | 0.38 |
| 18 | 1cyz_B_DT24_DC25 | BBB | BB00 | 76 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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