Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1cw9_A_DC1_DC2 | BBw | BB16 | 59 | 0.46 |
| 02 | 1cw9_A_DC2_DA3 | BB2 | BB07 | 79 | 0.38 |
| 03 | 1cw9_A_DA3_DG4 | BBB | BB00 | 61 | 0.35 |
| 04 | 1cw9_A_DC6_DC7 | BB2 | BB07 | 65 | 0.23 |
| 05 | 1cw9_A_DC7_DT8 | BBB | BB00 | 82 | 0.21 |
| 06 | 1cw9_A_DT8_DG9 | BB2 | BB07 | 74 | 0.34 |
| 07 | 1cw9_A_DG9_DG10 | BBB | BB00 | 72 | 0.25 |
| 08 | 1cw9_B_DC1_DC2 | BBw | BB16 | 86 | 0.19 |
| 09 | 1cw9_B_DC2_DA3 | BB2 | BB07 | 73 | 0.33 |
| 10 | 1cw9_B_DA3_DG4 | BBB | BB00 | 48 | 0.27 |
| 11 | 1cw9_B_DC6_DC7 | BBB | BB00 | 88 | 0.18 |
| 12 | 1cw9_B_DC7_DT8 | BBB | BB00 | 84 | 0.26 |
| 13 | 1cw9_B_DT8_DG9 | BB2 | BB07 | 68 | 0.24 |
| 14 | 1cw9_B_DG9_DG10 | BB2 | BB07 | 76 | 0.17 |
| 15 | 1cw9_C_DC1_DC2 | BBB | BB00 | 54 | 0.50 |
| 16 | 1cw9_C_DC2_DA3 | BB2 | BB07 | 81 | 0.35 |
| 17 | 1cw9_C_DA3_DG4 | BBB | BB00 | 76 | 0.21 |
| 18 | 1cw9_C_DC6_DC7 | NAN | NANT | 0 | 0.41 |
| 19 | 1cw9_C_DC7_DT8 | BBB | BB00 | 91 | 0.17 |
| 20 | 1cw9_C_DT8_DG9 | BB2 | BB07 | 82 | 0.29 |
| 21 | 1cw9_C_DG9_DG10 | BBB | BB00 | 63 | 0.28 |
| 22 | 1cw9_D_DC1_DC2 | BBw | BB16 | 86 | 0.18 |
| 23 | 1cw9_D_DC2_DA3 | BB2 | BB07 | 79 | 0.34 |
| 24 | 1cw9_D_DA3_DG4 | BBB | BB00 | 65 | 0.27 |
| 25 | 1cw9_D_DC6_DC7 | BBB | BB00 | 69 | 0.27 |
| 26 | 1cw9_D_DC7_DT8 | BBB | BB00 | 91 | 0.16 |
| 27 | 1cw9_D_DT8_DG9 | BB2 | BB07 | 89 | 0.28 |
| 28 | 1cw9_D_DG9_DG10 | BBB | BB00 | 78 | 0.20 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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