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Conformers: ABBIImiBZICOPNSYNN
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NMR STRUCTURE OF SRP RNA DOMAIN IV

Results of the assignment of 42 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011cq5_A_G1_G2AAAAA00760.21 AA00
021cq5_A_G2_C3AAAAA00800.21 AA00
031cq5_A_C3_G4AAAAA00910.22 AA00
041cq5_A_G4_U5AAAAA00340.35 AA00
051cq5_A_U5_U6NANNANT00.68 AB04
061cq5_A_U6_U7NANNANT00.80 AA11
071cq5_A_U7_A8NANNANT01.10 AA01
081cq5_A_A8_C9NANNANT01.01 AA01
091cq5_A_C9_C10NANNANT00.95 ZZ01
101cq5_A_C10_A11NANNANT00.57 BB07
111cq5_A_A11_G12NANNANT00.54 BA08
121cq5_A_G12_G13AAAAA04710.24 AA04
131cq5_A_G13_U14AAAAA04630.30 AA04
141cq5_A_U14_C15NANNANT00.58 AA01
151cq5_A_C15_A16NANNANT00.79 IC07
161cq5_A_A16_G17NANNANT00.86 AA01
171cq5_A_G17_G18NANNANT00.84 AA05
181cq5_A_G18_U19AAwAA01690.24 AA01
191cq5_A_U19_C20AAAAA00850.28 AA00
201cq5_A_C20_C21AAAAA00660.20 AA00
211cq5_A_C21_G22AAAAA00280.41 AA00
221cq5_A_G22_G23NANNANT00.39 OP04
231cq5_A_G23_A24NANNANT01.41 OP24
241cq5_A_A24_A25AAAAA08440.43 AA08
251cq5_A_A25_G26NANNANT00.58 AA05
261cq5_A_G26_G27AAAAA00170.42 AA00
271cq5_A_G27_A28AAAAA00680.29 AA00
281cq5_A_A28_A29AAwAA01290.32 AA01
291cq5_A_A29_G30AAwAA05430.34 AA05
301cq5_A_G30_C31NANNANT01.21 AA10
311cq5_A_C31_A32NANNANT01.66 AA01
321cq5_A_A32_G33NANNANT00.88 AA01
331cq5_A_G33_C34AAAAA00920.25 AA00
341cq5_A_C34_C35AAAAA00600.31 AA00
351cq5_A_C35_A36NANNANT00.69 AA01
361cq5_A_A36_A37NANNANT01.52 AA11
371cq5_A_A37_G38NANNANT01.28 AA04
381cq5_A_G38_G39AAAAA04370.32 AA04
391cq5_A_G39_C40AAAAA00820.17 AA00
401cq5_A_C40_G41AAAAA00840.22 AA00
411cq5_A_G41_C42AAAAA00810.31 AA00
421cq5_A_C42_C43AAAAA00840.20 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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