Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURE OF A REPLICATION FORK DNA POLYMERASE EDITING COMPLEX AT 2.7 A RESOLUTION
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1clq_E_DG2_DC3 | NAN | NANT | 0 | 0.76 |
| 02 | 1clq_E_DC3_DG4 | NAN | NANT | 0 | 0.47 |
| 03 | 1clq_E_DG4_DG5 | BBw | BB02 | 42 | 0.27 |
| 04 | 1clq_E_DG5_DA6 | B12 | BB04 | 9 | 0.59 |
| 05 | 1clq_E_DA6_DA7 | NAN | NANT | 0 | 0.58 |
| 06 | 1clq_E_DA7_DC8 | NAN | NANT | 0 | 0.82 |
| 07 | 1clq_E_DC8_DT9 | BBw | BB03 | 60 | 0.41 |
| 08 | 1clq_E_DT9_DA10 | NAN | NANT | 0 | 0.89 |
| 09 | 1clq_E_DA10_DC11 | NAN | NANT | 0 | 0.83 |
| 10 | 1clq_E_DC11_DT12 | NAN | NANT | 0 | 1.66 |
| 11 | 1clq_D_DC2_DG1 | NAN | NANT | 0 | 0.77 |
| 12 | 1clq_D_DG3_DC2 | NAN | NANT | 0 | 0.60 |
| 13 | 1clq_D_DC4_DG3 | NAN | NANT | 0 | 1.10 |
| 14 | 1clq_D_DC5_DC4 | B12 | BB05 | 32 | 0.49 |
| 15 | 1clq_D_DT6_DC5 | NAN | NANT | 0 | 0.60 |
| 16 | 1clq_D_DT7_DT6 | NAN | NANT | 0 | 0.78 |
| 17 | 1clq_D_DG8_DT7 | NAN | NANT | 0 | 0.71 |
| 18 | 1clq_D_DA9_DG8 | BBw | BB03 | 53 | 0.32 |
| 19 | 1clq_D_DT10_DA9 | NAN | NANT | 0 | 0.32 |
| 20 | 1clq_D_DG11_DT10 | NAN | NANT | 0 | 0.36 |
| 21 | 1clq_D_DA12_DG11 | NAN | NANT | 0 | 0.45 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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