Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
STRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE TRANSCRIPTION FACTOR E2F-DP
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1cf7_C_DT501_DT502 | BBB | BB00 | 69 | 0.21 |
| 02 | 1cf7_C_DT502_DT503 | BBB | BB00 | 83 | 0.16 |
| 03 | 1cf7_C_DT503_DT504 | BBw | BB02 | 78 | 0.21 |
| 04 | 1cf7_C_DT504_DC505 | BBB | BB00 | 35 | 0.42 |
| 05 | 1cf7_C_DC505_DG506 | BB2 | BB07 | 42 | 0.43 |
| 06 | 1cf7_C_DG506_DC507 | miB | BB15 | 44 | 0.30 |
| 07 | 1cf7_C_DC507_DG508 | BBB | BB00 | 83 | 0.23 |
| 08 | 1cf7_C_DG508_DC509 | BB2 | BB07 | 90 | 0.31 |
| 09 | 1cf7_C_DC509_DG510 | miB | BB13 | 82 | 0.29 |
| 10 | 1cf7_C_DG510_DG511 | BBB | BB00 | 55 | 0.28 |
| 11 | 1cf7_C_DG511_DT512 | BBw | BB02 | 74 | 0.23 |
| 12 | 1cf7_C_DT512_DT513 | BBw | BB02 | 63 | 0.26 |
| 13 | 1cf7_C_DT513_DT514 | BBw | BB02 | 57 | 0.25 |
| 14 | 1cf7_C_DT514_DT515 | BBw | BB02 | 48 | 0.27 |
| 15 | 1cf7_D_DA601_DA602 | BBB | BB00 | 72 | 0.22 |
| 16 | 1cf7_D_DA602_DA603 | BBB | BB00 | 72 | 0.18 |
| 17 | 1cf7_D_DA603_DA604 | BBw | BB02 | 89 | 0.19 |
| 18 | 1cf7_D_DA604_DC605 | BBw | BB02 | 16 | 0.38 |
| 19 | 1cf7_D_DC605_DC606 | BBB | BB00 | 41 | 0.46 |
| 20 | 1cf7_D_DC606_DG607 | NAN | NANT | 0 | 0.49 |
| 21 | 1cf7_D_DG607_DC608 | NAN | NANT | 0 | 0.54 |
| 22 | 1cf7_D_DC608_DG609 | BBB | BB00 | 44 | 0.43 |
| 23 | 1cf7_D_DG609_DC610 | BB2 | BB07 | 96 | 0.25 |
| 24 | 1cf7_D_DC610_DG611 | BBB | BB00 | 74 | 0.39 |
| 25 | 1cf7_D_DG611_DA612 | BB2 | BB07 | 91 | 0.17 |
| 26 | 1cf7_D_DA612_DA613 | B12 | BB04 | 69 | 0.18 |
| 27 | 1cf7_D_DA613_DA614 | NAN | NANT | 0 | 0.29 |
| 28 | 1cf7_D_DA614_DA615 | NAN | NANT | 0 | 0.37 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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