Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURE OF A T7 RNA POLYMERASE-T7 PROMOTER COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1cez_T_DT1_DA2 | NAN | NANT | 0 | 1.27 |
| 02 | 1cez_T_DA2_DT3 | BBB | BB00 | 23 | 0.50 |
| 03 | 1cez_T_DT3_DA4 | BBw | BB11 | 51 | 0.44 |
| 04 | 1cez_T_DA4_DG5 | NAN | NANT | 0 | 1.00 |
| 05 | 1cez_T_DG5_DT6 | BBB | BB00 | 40 | 0.41 |
| 06 | 1cez_T_DT6_DG7 | BBB | BB00 | 72 | 0.33 |
| 07 | 1cez_T_DG7_DA8 | BBB | BB00 | 65 | 0.31 |
| 08 | 1cez_T_DA8_DG9 | BBB | BB00 | 60 | 0.24 |
| 09 | 1cez_T_DG9_DT10 | BBw | BB02 | 66 | 0.19 |
| 10 | 1cez_T_DT10_DC11 | BBB | BB00 | 26 | 0.17 |
| 11 | 1cez_T_DC11_DG12 | BBB | BB00 | 76 | 0.23 |
| 12 | 1cez_T_DG12_DT13 | BBw | BB02 | 76 | 0.21 |
| 13 | 1cez_T_DT13_DA14 | B12 | BB04 | 62 | 0.34 |
| 14 | 1cez_T_DA14_DT15 | BBw | BB02 | 60 | 0.15 |
| 15 | 1cez_T_DT15_DT16 | BBB | BB00 | 58 | 0.35 |
| 16 | 1cez_T_DT16_DA17 | BB2 | BB07 | 29 | 0.43 |
| 17 | 1cez_N_DT101_DA102 | BBB | BB00 | 35 | 0.40 |
| 18 | 1cez_N_DA102_DA103 | NAN | NANT | 0 | 0.53 |
| 19 | 1cez_N_DA103_DT104 | NAN | NANT | 0 | 0.43 |
| 20 | 1cez_N_DT104_DA105 | BBB | BB00 | 83 | 0.32 |
| 21 | 1cez_N_DA105_DC106 | BBB | BB00 | 50 | 0.24 |
| 22 | 1cez_N_DC106_DG107 | BB2 | BB07 | 83 | 0.21 |
| 23 | 1cez_N_DG107_DA108 | BBB | BB00 | 71 | 0.21 |
| 24 | 1cez_N_DA108_DC109 | BBw | BB02 | 72 | 0.22 |
| 25 | 1cez_N_DC109_DT110 | BBB | BB00 | 55 | 0.27 |
| 26 | 1cez_N_DT110_DC111 | BBB | BB00 | 63 | 0.20 |
| 27 | 1cez_N_DC111_DA112 | BBB | BB00 | 70 | 0.26 |
| 28 | 1cez_N_DA112_DC113 | BBw | BB02 | 43 | 0.37 |
| 29 | 1cez_N_DC113_DT114 | NAN | NANT | 0 | 1.76 |
| 30 | 1cez_N_DT114_DA115 | NAN | NANT | 0 | 1.50 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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