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Conformers: ABBIImiBZICOPNSYNN
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E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX

Results of the assignment of 92 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011c7y_B_DA.A401_DA.A402BBBBB00550.41 BB00
021c7y_B_DA.A402_DG.A403BBBBB00910.22 BB00
031c7y_B_DG.A403_DT.A404BBBBB00590.36 BB00
041c7y_B_DT.A404_DT.A405BBBBB00800.23 BB00
051c7y_B_DT.A405_DG.A406BBwBB02850.14 BB02
061c7y_B_DG.A406_DG.A407BBBBB00830.36 BB00
071c7y_B_DG.A407_DG.A408BBBBB00690.24 BB00
081c7y_B_DG.A408_DA.A409BBBBB00500.28 BB00
091c7y_B_DA.A409_DT.A410BB2BB08730.43 BB08
101c7y_B_DT.A410_DT.A411BBBBB00750.22 BB00
111c7y_B_DT.A411_DG.A412BBBBB00270.32 BB00
121c7y_B_DG.A412_DT.A413BBBBB00710.29 BB00
131c7y_C_DC.A501_DT.A502BBBBB00850.21 BB00
141c7y_C_DT.A502_DG.A503BBBBB00830.18 BB00
151c7y_C_DG.A503_DT.A504B12BB04710.23 BB04
161c7y_C_DT.A504_DG.A505NANNANT00.44 BB05
171c7y_C_DG.A505_DT.A506BBBBB00810.16 BB00
181c7y_C_DT.A506_DG.A507BBBBB00530.41 BB00
191c7y_C_DG.A507_DT.A508NANNANT00.71 BB07
201c7y_C_DT.A508_DA.A509BBBBB00700.24 BB00
211c7y_C_DA.A509_DA.A510BBBBB00790.21 BB00
221c7y_C_DA.A510_DG.A511B12BB04750.21 BB04
231c7y_C_DG.A511_DC.A512BBwBB02550.41 BB02
241c7y_D_DG.B401_DC.B402BBBBB00620.33 BB00
251c7y_D_DC.B402_DT.B403BBBBB00890.24 BB00
261c7y_D_DT.B403_DT.B404BBBBB00730.27 BB00
271c7y_D_DT.B404_DA.B405BBBBB00620.37 BB00
281c7y_D_DA.B405_DC.B406BBwBB02900.13 BB02
291c7y_D_DC.B406_DA.B407B12BB04840.30 BB04
301c7y_D_DA.B407_DC.B408BBBBB00730.23 BB00
311c7y_D_DC.B408_DA.B409BBBBB00650.22 BB00
321c7y_D_DA.B409_DC.B410BB2BB08750.47 BB08
331c7y_D_DC.B410_DA.B411BBBBB00260.42 BB00
341c7y_D_DA.B411_DG.B412BBBBB00730.39 BB00
351c7y_D_DG.B412_DA.B413BBBBB00730.34 BB00
361c7y_E_DG.B501_DG.B502B12BB04750.33 BB04
371c7y_E_DG.B502_DT.B503BBBBB00770.20 BB00
381c7y_E_DT.B503_DT.B504B12BB04690.24 BB04
391c7y_E_DT.B504_DA.B505NANNANT00.37 BB02
401c7y_E_DA.B505_DG.B506BBBBB00790.19 BB00
411c7y_E_DG.B506_DG.B507BBBBB00600.38 BB00
421c7y_E_DG.B507_DG.B508NANNANT00.72 BB07
431c7y_E_DG.B508_DT.B509BBBBB00760.18 BB00
441c7y_E_DT.B509_DG.B510BBBBB00890.17 BB00
451c7y_E_DG.B510_DA.B511BBBBB00460.38 BB00
461c7y_E_DA.B511_DA.B512BBwBB02350.46 BB02
471c7y_F_DT.C401_DT.C402BBBBB00620.33 BB00
481c7y_F_DT.C402_DC.C403B12BB04870.15 BB04
491c7y_F_DC.C403_DA.C404BBBBB00770.22 BB00
501c7y_F_DA.C404_DC.C405BBBBB00710.32 BB00
511c7y_F_DC.C405_DC.C406BBwBB02810.21 BB02
521c7y_F_DC.C406_DC.C407BBBBB00820.35 BB00
531c7y_F_DC.C407_DT.C408BBBBB00660.28 BB00
541c7y_F_DT.C408_DA.C409BBBBB00650.20 BB00
551c7y_F_DA.C409_DA.C410BB2BB08790.45 BB08
561c7y_F_DA.C410_DC.C411BBBBB00700.22 BB00
571c7y_F_DC.C411_DC.C412BBBBB00840.20 BB00
581c7y_F_DC.C412_DA.C413BBBBB00110.50 BB00
591c7y_G_DG.C501_DA.C502BBBBB00660.37 BB00
601c7y_G_DA.C502_DC.C503BBBBB00520.24 BB00
611c7y_G_DC.C503_DA.C504B12BB04580.29 BB04
621c7y_G_DA.C504_DC.C505BBwBB02490.26 BB02
631c7y_G_DC.C505_DA.C506BBBBB00690.19 BB00
641c7y_G_DA.C506_DC.C507BBBBB00190.40 BB00
651c7y_G_DC.C507_DA.C508NANNANT00.70 BB07
661c7y_G_DA.C508_DT.C509BBBBB00550.22 BB00
671c7y_G_DT.C509_DT.C510BBBBB00450.42 BB00
681c7y_G_DT.C510_DC.C511BBBBB00340.47 BB00
691c7y_G_DC.C511_DG.C512BBwBB02470.42 BB02
701c7y_H_DC.D401_DG.D402BBBBB00440.39 BB00
711c7y_H_DG.D402_DA.D403BBBBB00510.42 BB00
721c7y_H_DA.D403_DA.D404BBBBB00390.36 BB00
731c7y_H_DA.D404_DT.D405BBBBB00500.30 BB00
741c7y_H_DT.D405_DG.D406BBwBB02820.20 BB02
751c7y_H_DG.D406_DT.D407BBBBB00580.27 BB00
761c7y_H_DT.D407_DG.D408BBBBB00520.28 BB00
771c7y_H_DG.D408_DT.D409NANNANT00.51 BB00
781c7y_H_DT.D409_DG.D410NANNANT00.47 BB05
791c7y_H_DG.D410_DT.D411BBBBB00720.19 BB00
801c7y_H_DT.D411_DC.D412BBBBB00780.19 BB00
811c7y_H_DC.D412_DT.D413BBBBB00300.43 BB00
821c7y_I_DC.D501_DA.D502BBBBB00480.42 BB00
831c7y_I_DA.D502_DA.D503BBBBB00810.15 BB00
841c7y_I_DA.D503_DT.D504B12BB04670.26 BB04
851c7y_I_DT.D504_DC.D505NANNANT00.44 BB05
861c7y_I_DC.D505_DC.D506BBBBB00820.16 BB00
871c7y_I_DC.D506_DC.D507BBBBB00370.41 BB00
881c7y_I_DC.D507_DA.D508NANNANT00.69 BB07
891c7y_I_DA.D508_DA.D509BBBBB00700.24 BB00
901c7y_I_DA.D509_DC.D510BBBBB00900.19 BB00
911c7y_I_DC.D510_DT.D511BBBBB00730.27 BB00
921c7y_I_DT.D511_DT.D512BBwBB02800.21 BB02
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers
δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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