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Conformers: ABBIImiBZICOPNSYNN
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SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011c4l_A_C1_G2AAwAA01320.29 AA01
021c4l_A_G2_A3AAAAA00500.25 AA00
031c4l_A_A3_C4NANNANT00.53 BA10
041c4l_A_C4_U5NANNANT00.74 BA09
051c4l_A_U5_C6NANNANT00.70 AA04
061c4l_A_C6_A7AAAAA00270.28 AA00
071c4l_A_A7_G8AAwAA01230.23 AA01
081c4l_A_G8_G9AAAAA00320.28 AA00
091c4l_B_C10_C11AAwAA01290.29 AA01
101c4l_B_C11_U12NANNANT00.32 AA04
111c4l_B_U12_G13NANNANT00.56 AA10
121c4l_B_G13_C14NANNANT00.40 AA11
131c4l_B_C14_G15AAAAA08190.37 AA08
141c4l_B_G15_U16NANNANT00.50 AA06
151c4l_B_U16_C17NANNANT00.48 AA10
161c4l_B_C17_G18NANNANT00.54 AA11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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