Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
NMR SOLUTION STRUCTURE OF [D(GCGAATCGC)2]

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011bwt_A_DG1_DC2BBBBB00560.29 BB00
021bwt_A_DC2_DG3BBBBB00720.20 BB00
031bwt_A_DG3_DA4BBBBB00710.26 BB00
041bwt_A_DA4_DA5BBBBB00400.47 BB00
051bwt_A_DA5_DT6B-ABA05870.29 BA05
061bwt_A_DT6_DT7BBBBB01550.20 BB01
071bwt_A_DT7_DC8BBBBB01800.14 BB01
081bwt_A_DC8_DG9BBBBB00230.29 BB00
091bwt_A_DG9_DC10B-ABA01500.14 BA01
101bwt_B_DG11_DC12BBBBB00570.30 BB00
111bwt_B_DC12_DG13BBBBB00730.20 BB00
121bwt_B_DG13_DA14B12BB04630.20 BB04
131bwt_B_DA14_DA15BBBBB00540.32 BB00
141bwt_B_DA15_DT16B-ABA05810.33 BA05
151bwt_B_DT16_DT17BBBBB01560.22 BB01
161bwt_B_DT17_DC18BBBBB01750.17 BB01
171bwt_B_DC18_DG19BBBBB00220.31 BB00
181bwt_B_DG19_DC20BBBBB00760.20 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N