Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1bvo_D_DT2_DG3 | NAN | NANT | 0 | 0.37 |
| 02 | 1bvo_D_DG3_DG4 | BBB | BB00 | 77 | 0.28 |
| 03 | 1bvo_D_DG4_DG5 | B12 | BB04 | 66 | 0.32 |
| 04 | 1bvo_D_DG5_DA6 | BBB | BB00 | 37 | 0.36 |
| 05 | 1bvo_D_DA6_DA7 | NAN | NANT | 0 | 0.61 |
| 06 | 1bvo_D_DA7_DT8 | BBB | BB00 | 91 | 0.17 |
| 07 | 1bvo_D_DT8_DT9 | BBB | BB01 | 71 | 0.22 |
| 08 | 1bvo_D_DT9_DT10 | BBw | BB02 | 41 | 0.20 |
| 09 | 1bvo_D_DT10_DC11 | NAN | NANT | 0 | 0.54 |
| 10 | 1bvo_D_DC11_DC12 | NAN | NANT | 0 | 0.58 |
| 11 | 1bvo_D_DC12_DC13 | BB2 | BB07 | 11 | 0.26 |
| 12 | 1bvo_D_DC13_DA14 | B-A | BA08 | 47 | 0.42 |
| 13 | 1bvo_D_DA14_DG15 | NAN | NANT | 0 | 0.37 |
| 14 | 1bvo_E_DC21_DT22 | NAN | NANT | 0 | 0.39 |
| 15 | 1bvo_E_DT22_DG23 | BBB | BB00 | 36 | 0.29 |
| 16 | 1bvo_E_DG23_DG24 | BBB | BB00 | 76 | 0.26 |
| 17 | 1bvo_E_DG24_DG25 | B12 | BB04 | 63 | 0.27 |
| 18 | 1bvo_E_DG25_DT26 | BBB | BB00 | 25 | 0.39 |
| 19 | 1bvo_E_DT26_DT27 | NAN | NANT | 0 | 0.56 |
| 20 | 1bvo_E_DT27_DA28 | NAN | NANT | 0 | 0.32 |
| 21 | 1bvo_E_DA28_DA29 | BBB | BB01 | 84 | 0.26 |
| 22 | 1bvo_E_DA29_DA30 | BBw | BB02 | 46 | 0.28 |
| 23 | 1bvo_E_DA30_DC31 | BBB | BB00 | 47 | 0.39 |
| 24 | 1bvo_E_DC31_DC32 | BBB | BB00 | 62 | 0.24 |
| 25 | 1bvo_E_DC32_DC33 | BB2 | BB07 | 79 | 0.19 |
| 26 | 1bvo_E_DC33_DA34 | B12 | BB04 | 67 | 0.33 |
| 27 | 1bvo_E_DA34_DG35 | BBB | BB00 | 50 | 0.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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