Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1bua_C_DA901_DA902 | NAN | NANT | 0 | 0.44 |
| 02 | 1bua_C_DA902_DA903 | BBB | BB00 | 83 | 0.15 |
| 03 | 1bua_C_DA903_DG904 | BBB | BB00 | 83 | 0.19 |
| 04 | 1bua_C_DG904_DA905 | NAN | NANT | 0 | 0.35 |
| 05 | 1bua_C_DA905_DC906 | NAN | NANT | 0 | 0.62 |
| 06 | 1bua_C_DC906_DI907 | NAN | NANT | 0 | 0.23 |
| 07 | 1bua_C_DI907_DT908 | BBB | BB00 | 83 | 0.25 |
| 08 | 1bua_C_DT908_DC909 | BBB | BB00 | 60 | 0.30 |
| 09 | 1bua_C_DC909_DT910 | BBB | BB00 | 80 | 0.19 |
| 10 | 1bua_C_DT910_DT911 | miB | BB15 | 13 | 0.38 |
| 11 | 1bua_D_DA801_DA802 | SYN | BBS1 | 71 | 0.33 |
| 12 | 1bua_D_DA802_DA803 | BBB | BB00 | 64 | 0.23 |
| 13 | 1bua_D_DA803_DG804 | BBB | BB00 | 67 | 0.22 |
| 14 | 1bua_D_DG804_DA805 | B-A | BA16 | 34 | 0.25 |
| 15 | 1bua_D_DA805_DC806 | NAN | NANT | 0 | 0.37 |
| 16 | 1bua_D_DC806_DI807 | A-B | AB04 | 40 | 0.20 |
| 17 | 1bua_D_DI807_DT808 | BBB | BB00 | 82 | 0.21 |
| 18 | 1bua_D_DT808_DC809 | BBB | BB00 | 55 | 0.30 |
| 19 | 1bua_D_DC809_DT810 | BBB | BB00 | 68 | 0.21 |
| 20 | 1bua_D_DT810_DT811 | B12 | BB04 | 78 | 0.17 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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