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Conformers: ABBIImiBZICOPNSYNN
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HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011bpz_T_DC1_DC2B-ABA05580.28 BA05
021bpz_T_DC2_DG3NANNANT00.39 AB02
031bpz_T_DG3_DA4BBBBB00580.33 BB00
041bpz_T_DA4_DC5B-ABA01490.29 BA01
051bpz_T_DC5_DC6NANNANT01.24 OP21
061bpz_T_DC6_DA7BBBBB00730.32 BB00
071bpz_T_DA7_DC8BBBBB00380.32 BB00
081bpz_T_DC8_DG9BBBBB00300.52 BB00
091bpz_T_DG9_DC10B-ABA05560.29 BA05
101bpz_T_DC10_DA11BBBBB00400.30 BB00
111bpz_T_DA11_DT12B-ABA05340.30 BA05
121bpz_T_DT12_DC13BBBBB01510.21 BB01
131bpz_T_DC13_DA14BBBBB01450.30 BB01
141bpz_T_DA14_DG15B-ABA05720.24 BA05
151bpz_T_DG15_DC16BBBBB00130.26 BB00
161bpz_P_DG1_DC2NANNANT00.43 BA05
171bpz_P_DC2_DT3A-BAB02680.29 AB02
181bpz_P_DT3_DG4BBBBB00350.21 BB00
191bpz_P_DG4_DA5BBBBB00510.33 BB00
201bpz_P_DA5_DT6BBBBB01520.29 BB01
211bpz_P_DT6_DG7BBBBB00180.35 BB00
221bpz_P_DG7_DC8BBBBB01360.28 BB01
231bpz_P_DC8_DG9BBBBB00500.20 BB00
241bpz_P_DG9_DT10BBBBB01340.38 BB01
251bpz_P_DT10_DG11NANNANT00.37 AA02
261bpz_D_DG1_DT2BBBBB00700.24 BB00
271bpz_D_DT2_DC3BBBBB00820.16 BB00
281bpz_D_DC3_DG4BBBBB01500.24 BB01
291bpz_D_DG4_DG5BBBBB00140.54 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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