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Conformers: ABBIImiBZICOPNSYNN
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HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNA

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011bnk_D_DG1_DA2BBBBB00870.23 BB00
021bnk_D_DA2_DC3BBBBB00810.23 BB00
031bnk_D_DC3_DA4B12BB04890.14 BB04
041bnk_D_DA4_DT5BBBBB00920.17 BB00
051bnk_D_DT5_DG6BB2BB07920.16 BB07
061bnk_D_DT8_DT9BBBBB00610.23 BB00
071bnk_D_DT9_DG10BBBBB00640.30 BB00
081bnk_D_DG10_DC11BB2BB07790.28 BB07
091bnk_D_DC11_DC12BBBBB00820.25 BB00
101bnk_D_DC12_DT13BBBBB00780.34 BB00
111bnk_E_DG14_DG15BBBBB00630.24 BB00
121bnk_E_DG15_DC16BBBBB00870.14 BB00
131bnk_E_DC16_DA17B12BB04820.24 BB04
141bnk_E_DA17_DA18BBBBB00910.15 BB00
151bnk_E_DA18_DT19BBBBB00530.46 BB00
161bnk_E_DT19_DC20B12BB04230.35 BB04
171bnk_E_DC20_DA21BB2BB07760.30 BB07
181bnk_E_DA21_DT22BBBBB00740.19 BB00
191bnk_E_DT22_DG23BBBBB00840.29 BB00
201bnk_E_DG23_DT24BBBBB00920.15 BB00
211bnk_E_DT24_DC25BBBBB00950.13 BB00
221bnk_E_DC25_DA26BBBBB00500.38 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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