Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN (MARA)/DNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1bl0_B_DG401_DG402 | BBB | BB00 | 13 | 0.53 |
| 02 | 1bl0_B_DG402_DG403 | BBB | BB00 | 47 | 0.32 |
| 03 | 1bl0_B_DG403_DG404 | BBB | BB00 | 46 | 0.42 |
| 04 | 1bl0_B_DG404_DA405 | BBB | BB00 | 76 | 0.18 |
| 05 | 1bl0_B_DA405_DT406 | BBw | BB02 | 69 | 0.18 |
| 06 | 1bl0_B_DT406_DT407 | BBw | BB02 | 77 | 0.26 |
| 07 | 1bl0_B_DT407_DT408 | BBw | BB02 | 69 | 0.23 |
| 08 | 1bl0_B_DT408_DA409 | BBw | BB02 | 53 | 0.25 |
| 09 | 1bl0_B_DA409_DG410 | BBB | BB00 | 46 | 0.38 |
| 10 | 1bl0_B_DG410_DC411 | NAN | NANT | 0 | 0.44 |
| 11 | 1bl0_B_DC411_DA412 | BBB | BB00 | 32 | 0.40 |
| 12 | 1bl0_B_DA412_DA413 | BBB | BB00 | 71 | 0.18 |
| 13 | 1bl0_B_DA413_DA414 | BBB | BB00 | 73 | 0.19 |
| 14 | 1bl0_B_DA414_DA415 | BBB | BB00 | 58 | 0.34 |
| 15 | 1bl0_B_DA415_DC416 | BBw | BB02 | 69 | 0.22 |
| 16 | 1bl0_B_DC416_DG417 | BBB | BB00 | 39 | 0.42 |
| 17 | 1bl0_B_DG417_DT418 | BBw | BB02 | 40 | 0.25 |
| 18 | 1bl0_B_DT418_DG419 | B12 | BB04 | 44 | 0.24 |
| 19 | 1bl0_B_DG419_DG420 | BBB | BB00 | 59 | 0.27 |
| 20 | 1bl0_B_DG420_DC421 | NAN | NANT | 0 | 0.25 |
| 21 | 1bl0_B_DC421_DA422 | BBB | BB00 | 41 | 0.38 |
| 22 | 1bl0_B_DA422_DT423 | BBw | BB02 | 48 | 0.31 |
| 23 | 1bl0_B_DT423_DC424 | NAN | NANT | 0 | 0.54 |
| 24 | 1bl0_C_DC425_DC426 | miB | BB15 | 24 | 0.27 |
| 25 | 1bl0_C_DC426_DG427 | BBB | BB00 | 55 | 0.28 |
| 26 | 1bl0_C_DG427_DA428 | B12 | BB04 | 42 | 0.22 |
| 27 | 1bl0_C_DA428_DT429 | BBw | BB02 | 86 | 0.19 |
| 28 | 1bl0_C_DT429_DG430 | BBB | BB00 | 52 | 0.35 |
| 29 | 1bl0_C_DG430_DC431 | BBw | BB02 | 63 | 0.22 |
| 30 | 1bl0_C_DC431_DC432 | NAN | NANT | 0 | 0.33 |
| 31 | 1bl0_C_DC432_DA433 | BBB | BB00 | 52 | 0.33 |
| 32 | 1bl0_C_DA433_DC434 | miB | BB15 | 77 | 0.17 |
| 33 | 1bl0_C_DC434_DG435 | B12 | BB04 | 51 | 0.34 |
| 34 | 1bl0_C_DG435_DT436 | BBw | BB02 | 44 | 0.18 |
| 35 | 1bl0_C_DT436_DT437 | BBw | BB02 | 59 | 0.25 |
| 36 | 1bl0_C_DT437_DT438 | BBB | BB00 | 62 | 0.21 |
| 37 | 1bl0_C_DT438_DT439 | BBB | BB00 | 71 | 0.30 |
| 38 | 1bl0_C_DT439_DG440 | BBB | BB00 | 58 | 0.26 |
| 39 | 1bl0_C_DG440_DC441 | BBw | BB02 | 58 | 0.23 |
| 40 | 1bl0_C_DC441_DT442 | BBw | BB02 | 30 | 0.36 |
| 41 | 1bl0_C_DT442_DA443 | NAN | NANT | 0 | 0.56 |
| 42 | 1bl0_C_DA443_DA444 | BBw | BB02 | 67 | 0.32 |
| 43 | 1bl0_C_DA444_DA445 | B12 | BB05 | 65 | 0.31 |
| 44 | 1bl0_C_DA445_DT446 | NAN | NANT | 0 | 0.48 |
| 45 | 1bl0_C_DT446_DC447 | miB | BB15 | 83 | 0.26 |
| 46 | 1bl0_C_DC447_DC448 | BBB | BB00 | 11 | 0.35 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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