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Conformers: ABBIImiBZICOPNSYNN
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ECORV ENDONUCLEASE COMPLEX WITH 5'-CGGGATATCCC DNA

Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011bgb_C_DC801_DG802NANNANT00.43 BB00
021bgb_C_DG802_DG803NANNANT00.30 BA08
031bgb_C_DG803_DG804BBBBB00490.23 BB00
041bgb_C_DG804_DA805B-ABA16300.23 BA16
051bgb_C_DA805_DT806NANNANT00.41 AB04
061bgb_C_DT806_DA807A-BAB04290.20 AB04
071bgb_C_DA807_DT808BBBBB00620.32 BB00
081bgb_C_DT808_DC809BBBBB00430.37 BB00
091bgb_C_DC809_DC810BBBBB00690.25 BB00
101bgb_C_DC810_DC811B12BB04410.35 BB04
111bgb_D_DG902_DG903B12BB04840.17 BB04
121bgb_D_DG903_DG904BBBBB00750.18 BB00
131bgb_D_DG904_DA905B-ABA16150.23 BA16
141bgb_D_DA905_DT906A-BAB03240.58 AB03
151bgb_D_DT906_DA907NANNANT00.26 AB04
161bgb_D_DA907_DT908BBBBB01620.19 BB01
171bgb_D_DT908_DC909BBBBB00450.33 BB00
181bgb_D_DC909_DC910BBBBB00610.29 BB00
191bgb_D_DC910_DC911B12BB04770.27 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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