Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1bf5_B_DA1001_DC1002 | NAN | NANT | 0 | 0.73 |
| 02 | 1bf5_B_DC1002_DA1003 | BBw | BB16 | 28 | 0.49 |
| 03 | 1bf5_B_DA1003_DG1004 | B12 | BB04 | 29 | 0.40 |
| 04 | 1bf5_B_DG1004_DT1005 | BBw | BB02 | 69 | 0.20 |
| 05 | 1bf5_B_DT1005_DT1006 | BBB | BB00 | 77 | 0.26 |
| 06 | 1bf5_B_DT1006_DT1007 | BBB | BB00 | 61 | 0.32 |
| 07 | 1bf5_B_DT1007_DC1008 | BBw | BB02 | 73 | 0.34 |
| 08 | 1bf5_B_DC1008_DC1009 | BBw | BB02 | 38 | 0.30 |
| 09 | 1bf5_B_DC1009_DC1010 | B12 | BB04 | 56 | 0.41 |
| 10 | 1bf5_B_DG1011_DT1012 | B12 | BB04 | 85 | 0.16 |
| 11 | 1bf5_B_DT1012_DA1013 | B12 | BB04 | 49 | 0.40 |
| 12 | 1bf5_B_DA1013_DA1014 | BBB | BB00 | 64 | 0.29 |
| 13 | 1bf5_B_DA1014_DA1015 | NAN | NANT | 0 | 0.65 |
| 14 | 1bf5_B_DA1015_DT1016 | miB | BB10 | 31 | 0.38 |
| 15 | 1bf5_B_DT1016_DG1017 | BBB | BB00 | 56 | 0.51 |
| 16 | 1bf5_B_DG1017_DC1018 | BBw | BB02 | 20 | 0.51 |
| 17 | 1bf5_C_DT2001_DG2002 | NAN | NANT | 0 | 0.75 |
| 18 | 1bf5_C_DG2002_DC2003 | B12 | BB04 | 10 | 0.48 |
| 19 | 1bf5_C_DC2003_DA2004 | BB2 | BB07 | 32 | 0.48 |
| 20 | 1bf5_C_DA2004_DT2005 | BBw | BB02 | 85 | 0.19 |
| 21 | 1bf5_C_DT2005_DT2006 | BBB | BB00 | 41 | 0.44 |
| 22 | 1bf5_C_DT2006_DT2007 | BBB | BB00 | 67 | 0.26 |
| 23 | 1bf5_C_DT2007_DA2008 | BBw | BB02 | 45 | 0.27 |
| 24 | 1bf5_C_DA2008_DC2009 | BBw | BB03 | 56 | 0.24 |
| 25 | 1bf5_C_DC2009_DG2010 | NAN | NANT | 0 | 0.47 |
| 26 | 1bf5_C_DG2010_DG2011 | BBB | BB00 | 20 | 0.41 |
| 27 | 1bf5_C_DG2011_DG2012 | NAN | NANT | 0 | 0.60 |
| 28 | 1bf5_C_DG2012_DA2013 | BBB | BB00 | 76 | 0.21 |
| 29 | 1bf5_C_DA2013_DA2014 | B12 | BB04 | 37 | 0.35 |
| 30 | 1bf5_C_DA2014_DA2015 | BBB | BB00 | 93 | 0.17 |
| 31 | 1bf5_C_DA2015_DC2016 | BBw | BB02 | 64 | 0.30 |
| 32 | 1bf5_C_DC2016_DT2017 | BBB | BB00 | 36 | 0.70 |
| 33 | 1bf5_C_DT2017_DG2018 | NAN | NANT | 0 | 0.85 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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