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Conformers: ABBIImiBZICOPNSYNN
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INTRAMOLECULAR TRIPLEX, NMR, 10 STRUCTURES

Results of the assignment of 150 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011bce-m10_A_DA1_DA2B-ABA05530.19 BA05
0021bce-m1_A_DA1_DA2B-ABA05720.16 BA05
0031bce-m2_A_DA1_DA2B-ABA05670.17 BA05
0041bce-m3_A_DA1_DA2B-ABA05760.17 BA05
0051bce-m4_A_DA1_DA2B-ABA05760.16 BA05
0061bce-m5_A_DA1_DA2B-ABA05650.17 BA05
0071bce-m6_A_DA1_DA2B-ABA05610.17 BA05
0081bce-m7_A_DA1_DA2BBBBB01540.17 BB01
0091bce-m8_A_DA1_DA2B-ABA05580.18 BA05
0101bce-m9_A_DA1_DA2B-ABA05380.19 BA05
0111bce-m10_A_DA2_DG3NANNANT00.43 BB03
0121bce-m1_A_DA2_DG3B-ABA05540.29 BA05
0131bce-m2_A_DA2_DG3B-ABA05580.33 BA05
0141bce-m3_A_DA2_DG3B-ABA05500.28 BA05
0151bce-m4_A_DA2_DG3B-ABA0590.49 BA05
0161bce-m5_A_DA2_DG3B-ABA05240.47 BA05
0171bce-m6_A_DA2_DG3B-ABA05600.31 BA05
0181bce-m7_A_DA2_DG3B-ABA05650.29 BA05
0191bce-m8_A_DA2_DG3B-ABA05290.42 BA05
0201bce-m9_A_DA2_DG3NANNANT00.43 BB03
0211bce-m10_A_DG3_DG4B-ABA05210.30 BA05
0221bce-m1_A_DG3_DG4BBBBB01400.23 BB01
0231bce-m2_A_DG3_DG4BBBBB01430.26 BB01
0241bce-m3_A_DG3_DG4NANNANT00.29 BB03
0251bce-m4_A_DG3_DG4NANNANT00.23 BB03
0261bce-m5_A_DG3_DG4NANNANT00.22 BB03
0271bce-m6_A_DG3_DG4BBBBB01420.22 BB01
0281bce-m7_A_DG3_DG4BBBBB01490.22 BB01
0291bce-m8_A_DG3_DG4BBBBB01240.26 BB01
0301bce-m9_A_DG3_DG4B-ABA05160.28 BA05
0311bce-m10_A_DG4_DA5BBBBB01650.20 BB01
0321bce-m1_A_DG4_DA5BBBBB01510.20 BB01
0331bce-m2_A_DG4_DA5BBBBB01570.21 BB01
0341bce-m3_A_DG4_DA5BBBBB01380.28 BB01
0351bce-m4_A_DG4_DA5BBBBB01340.30 BB01
0361bce-m5_A_DG4_DA5B-ABA05230.24 BA05
0371bce-m6_A_DG4_DA5BBBBB01420.19 BB01
0381bce-m7_A_DG4_DA5BBBBB01630.19 BB01
0391bce-m8_A_DG4_DA5B-ABA05760.17 BA05
0401bce-m9_A_DG4_DA5NANNANT00.42 BB03
0411bce-m10_A_DA5_DA6miBBB13540.26 BB13
0421bce-m1_A_DA5_DA6BBBBB01540.22 BB01
0431bce-m2_A_DA5_DA6BBwBB03120.23 BB03
0441bce-m3_A_DA5_DA6NANNANT00.26 BB03
0451bce-m4_A_DA5_DA6NANNANT00.30 BB03
0461bce-m5_A_DA5_DA6BBBBB01520.22 BB01
0471bce-m6_A_DA5_DA6NANNANT00.30 BB03
0481bce-m7_A_DA5_DA6NANNANT00.24 BB03
0491bce-m8_A_DA5_DA6BBBBB01510.22 BB01
0501bce-m9_A_DA5_DA6BBwBB03540.33 BB03
0511bce-m10_B_DT7_DT8BBwBB03740.21 BB03
0521bce-m1_B_DT7_DT8BBwBB03730.21 BB03
0531bce-m2_B_DT7_DT8BBwBB03710.23 BB03
0541bce-m3_B_DT7_DT8BBwBB03670.25 BB03
0551bce-m4_B_DT7_DT8BBBBB01750.18 BB01
0561bce-m5_B_DT7_DT8BBBBB01720.18 BB01
0571bce-m6_B_DT7_DT8BBwBB03130.30 BB03
0581bce-m7_B_DT7_DT8BBwBB03420.36 BB03
0591bce-m8_B_DT7_DT8BBBBB01770.17 BB01
0601bce-m9_B_DT7_DT8BBwBB03560.34 BB03
0611bce-m10_B_DT8_DC9BBBBB01700.21 BB01
0621bce-m1_B_DT8_DC9BBBBB00390.39 BB00
0631bce-m2_B_DT8_DC9BBBBB01570.32 BB01
0641bce-m3_B_DT8_DC9BBwBB03350.48 BB03
0651bce-m4_B_DT8_DC9BBBBB00540.32 BB00
0661bce-m5_B_DT8_DC9BBBBB00620.28 BB00
0671bce-m6_B_DT8_DC9BBBBB00240.39 BB00
0681bce-m7_B_DT8_DC9BBwBB03560.39 BB03
0691bce-m8_B_DT8_DC9BBwBB03170.40 BB03
0701bce-m9_B_DT8_DC9BBBBB01440.37 BB01
0711bce-m10_B_DC9_DC10BBBBB00570.31 BB00
0721bce-m1_B_DC9_DC10BBBBB01740.16 BB01
0731bce-m2_B_DC9_DC10BBBBB01540.25 BB01
0741bce-m3_B_DC9_DC10BBBBB00520.27 BB00
0751bce-m4_B_DC9_DC10BBBBB00640.25 BB00
0761bce-m5_B_DC9_DC10BBBBB00520.34 BB00
0771bce-m6_B_DC9_DC10BBBBB00600.27 BB00
0781bce-m7_B_DC9_DC10BBBBB00450.32 BB00
0791bce-m8_B_DC9_DC10BBBBB00500.30 BB00
0801bce-m9_B_DC9_DC10BBBBB00380.34 BB00
0811bce-m10_B_DC10_DT11BBwBB03740.36 BB03
0821bce-m1_B_DC10_DT11BBBBB01240.23 BB01
0831bce-m2_B_DC10_DT11BBwBB03680.37 BB03
0841bce-m3_B_DC10_DT11BBBBB01260.22 BB01
0851bce-m4_B_DC10_DT11BBBBB01220.17 BB01
0861bce-m5_B_DC10_DT11BBwBB03780.30 BB03
0871bce-m6_B_DC10_DT11BBwBB03710.36 BB03
0881bce-m7_B_DC10_DT11BBwBB03770.34 BB03
0891bce-m8_B_DC10_DT11BBwBB03780.30 BB03
0901bce-m9_B_DC10_DT11BBwBB03700.38 BB03
0911bce-m10_B_DT11_DT12BBwBB03770.21 BB03
0921bce-m1_B_DT11_DT12NANNANT00.37 BB03
0931bce-m2_B_DT11_DT12BBwBB03750.21 BB03
0941bce-m3_B_DT11_DT12NANNANT00.37 BB03
0951bce-m4_B_DT11_DT12NANNANT00.39 BB03
0961bce-m5_B_DT11_DT12BBwBB03740.21 BB03
0971bce-m6_B_DT11_DT12BBwBB03750.22 BB03
0981bce-m7_B_DT11_DT12BBwBB03750.21 BB03
0991bce-m8_B_DT11_DT12BBwBB03740.21 BB03
1001bce-m9_B_DT11_DT12BBwBB03750.21 BB03
1011bce-m10_C_DT13_DT14BBBBB01490.18 BB01
1021bce-m1_C_DT13_DT14BBBBB01810.17 BB01
1031bce-m2_C_DT13_DT14BBBBB01550.17 BB01
1041bce-m3_C_DT13_DT14BBBBB01840.13 BB01
1051bce-m4_C_DT13_DT14BBwBB03920.27 BB03
1061bce-m5_C_DT13_DT14B-ABA05550.18 BA05
1071bce-m6_C_DT13_DT14BBBBB01830.13 BB01
1081bce-m7_C_DT13_DT14BBBBB01490.17 BB01
1091bce-m8_C_DT13_DT14BBwBB03870.32 BB03
1101bce-m9_C_DT13_DT14BBBBB01790.17 BB01
1111bce-m10_C_DT14_DC15NANNANT00.42 BB03
1121bce-m1_C_DT14_DC15B-ABA05580.15 BA05
1131bce-m2_C_DT14_DC15NANNANT00.44 BB03
1141bce-m3_C_DT14_DC15B-ABA05530.15 BA05
1151bce-m4_C_DT14_DC15NANNANT00.54 BB03
1161bce-m5_C_DT14_DC15NANNANT00.44 BB03
1171bce-m6_C_DT14_DC15B-ABA05700.17 BA05
1181bce-m7_C_DT14_DC15NANNANT00.43 BB03
1191bce-m8_C_DT14_DC15NANNANT00.52 BB03
1201bce-m9_C_DT14_DC15B-ABA05470.16 BA05
1211bce-m10_C_DC15_DC16BBBBB00520.27 BB00
1221bce-m1_C_DC15_DC16NANNANT00.50 AA02
1231bce-m2_C_DC15_DC16BBBBB00470.26 BB00
1241bce-m3_C_DC15_DC16BBBBB01220.32 BB01
1251bce-m4_C_DC15_DC16NANNANT00.35 BB11
1261bce-m5_C_DC15_DC16BBwBB03560.38 BB03
1271bce-m6_C_DC15_DC16NANNANT00.51 BB03
1281bce-m7_C_DC15_DC16BBBBB00460.28 BB00
1291bce-m8_C_DC15_DC16BBwBB03140.48 BB03
1301bce-m9_C_DC15_DC16BBBBB01250.28 BB01
1311bce-m10_C_DC16_DT17BBBBB00690.21 BB00
1321bce-m1_C_DC16_DT17BBBBB01480.21 BB01
1331bce-m2_C_DC16_DT17BBBBB01610.19 BB01
1341bce-m3_C_DC16_DT17BBwBB03440.36 BB03
1351bce-m4_C_DC16_DT17BBBBB00160.43 BB00
1361bce-m5_C_DC16_DT17NANNANT00.43 BB03
1371bce-m6_C_DC16_DT17BBwBB03550.38 BB03
1381bce-m7_C_DC16_DT17BBwBB03830.23 BB03
1391bce-m8_C_DC16_DT17NANNANT00.45 BB03
1401bce-m9_C_DC16_DT17BBBBB00540.28 BB00
1411bce-m10_C_DT17_DT18B-ABA05310.20 BA05
1421bce-m1_C_DT17_DT18B-ABA05620.12 BA05
1431bce-m2_C_DT17_DT18B-ABA05290.22 BA05
1441bce-m3_C_DT17_DT18NANNANT00.42 BA05
1451bce-m4_C_DT17_DT18BBBBB01820.20 BB01
1461bce-m5_C_DT17_DT18BBBBB01810.26 BB01
1471bce-m6_C_DT17_DT18BBBBB00540.34 BB00
1481bce-m7_C_DT17_DT18NANNANT00.44 BA05
1491bce-m8_C_DT17_DT18BBBBB01800.25 BB01
1501bce-m9_C_DT17_DT18B-ABA05480.18 BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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