Conformers:
ABBIImiBZICOPNSYNN
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SERUM RESPONSE FACTOR ACCESSORY PROTEIN 1A (SAP-1)/DNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1bc7_A_DG1_DA2 | BBB | BB00 | 59 | 0.31 |
| 02 | 1bc7_A_DA2_DC3 | BBB | BB00 | 39 | 0.25 |
| 03 | 1bc7_A_DC3_DA4 | BBB | BB00 | 75 | 0.34 |
| 04 | 1bc7_A_DA4_DG5 | BBB | BB00 | 89 | 0.23 |
| 05 | 1bc7_A_DG5_DG6 | B12 | BB04 | 73 | 0.22 |
| 06 | 1bc7_A_DG6_DA7 | BBB | BB00 | 86 | 0.23 |
| 07 | 1bc7_A_DA7_DT8 | BBB | BB00 | 84 | 0.17 |
| 08 | 1bc7_A_DT8_DG9 | BBB | BB00 | 78 | 0.19 |
| 09 | 1bc7_A_DG9_DT10 | BBB | BB00 | 82 | 0.24 |
| 10 | 1bc7_A_DT10_DG11 | BBB | BB00 | 84 | 0.30 |
| 11 | 1bc7_B_DC12_DA13 | BBB | BB00 | 53 | 0.49 |
| 12 | 1bc7_B_DA13_DC14 | miB | BB12 | 90 | 0.18 |
| 13 | 1bc7_B_DC14_DA15 | BBw | BB16 | 80 | 0.39 |
| 14 | 1bc7_B_DA15_DT16 | BBB | BB01 | 86 | 0.19 |
| 15 | 1bc7_B_DT16_DC17 | BBB | BB00 | 59 | 0.23 |
| 16 | 1bc7_B_DC17_DC18 | BBB | BB00 | 37 | 0.23 |
| 17 | 1bc7_B_DC18_DT19 | BBB | BB00 | 65 | 0.39 |
| 18 | 1bc7_B_DT19_DG20 | BBw | BB02 | 77 | 0.20 |
| 19 | 1bc7_B_DG20_DT21 | BBB | BB00 | 82 | 0.18 |
| 20 | 1bc7_B_DT21_DC22 | BBB | BB00 | 39 | 0.19 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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