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Conformers: ABBIImiBZICOPNSYNN
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NMR STRUCTURE OF THE DIMER INITIATION COMPLEX OF HIV-1 GENOMIC RNA, MINIMIZED AVERAGE STRUCTURE

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011bau_A_G1_G2AAAAA00940.14 AA00
021bau_A_G2_C3AAAAA00920.16 AA00
031bau_A_C3_A4AAAAA00870.20 AA00
041bau_A_A4_A5AAAAA00880.18 AA00
051bau_A_A5_U6AAAAA00750.26 AA00
061bau_A_U6_G7A-BAB05460.53 AB05
071bau_A_G7_A8NANNANT00.62 OP12
081bau_A_A8_A9NANNANT00.91 OP04
091bau_A_A9_G10AAuAA12380.31 AA12
101bau_A_G10_C11AAAAA0090.49 AA00
111bau_A_C11_G12AAAAA00130.39 AA00
121bau_A_G12_C13AAAAA08100.44 AA08
131bau_A_C13_G14AAAAA00450.44 AA00
141bau_A_G14_C15AAAAA00720.22 AA00
151bau_A_C15_A16AAAAA04310.59 AA04
161bau_A_A16_C17AAuAA12390.33 AA12
171bau_A_C17_G18AAAAA00400.27 AA00
181bau_A_G18_U19AAAAA00840.29 AA00
191bau_A_U19_U20AAAAA00870.18 AA00
201bau_A_U20_G21AAAAA00750.28 AA00
211bau_A_G21_C22AAAAA00460.19 AA00
221bau_A_C22_C23AAAAA00350.25 AA00
231bau_B_G1_G2AAAAA00940.14 AA00
241bau_B_G2_C3AAAAA00920.16 AA00
251bau_B_C3_A4AAAAA00870.20 AA00
261bau_B_A4_A5AAAAA00880.18 AA00
271bau_B_A5_U6AAAAA00750.26 AA00
281bau_B_U6_G7A-BAB05460.53 AB05
291bau_B_G7_A8NANNANT00.62 OP12
301bau_B_A8_A9NANNANT00.91 OP04
311bau_B_A9_G10AAuAA12380.31 AA12
321bau_B_G10_C11AAAAA0090.49 AA00
331bau_B_C11_G12AAAAA00130.39 AA00
341bau_B_G12_C13AAAAA08100.44 AA08
351bau_B_C13_G14AAAAA00450.44 AA00
361bau_B_G14_C15AAAAA00720.22 AA00
371bau_B_C15_A16AAAAA04310.59 AA04
381bau_B_A16_C17AAuAA12390.33 AA12
391bau_B_C17_G18AAAAA00400.27 AA00
401bau_B_G18_U19AAAAA00840.29 AA00
411bau_B_U19_U20AAAAA00870.18 AA00
421bau_B_U20_G21AAAAA00750.28 AA00
431bau_B_G21_C22AAAAA00460.19 AA00
441bau_B_C22_C23AAAAA00350.25 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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