Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1b69_B_DG101_DA102 | NAN | NANT | 0 | 0.64 |
| 02 | 1b69_B_DA102_DG103 | BBB | BB00 | 49 | 0.29 |
| 03 | 1b69_B_DG103_DT104 | BBB | BB00 | 20 | 0.39 |
| 04 | 1b69_B_DT104_DA105 | BBB | BB01 | 44 | 0.26 |
| 05 | 1b69_B_DA105_DG106 | BBB | BB01 | 63 | 0.22 |
| 06 | 1b69_B_DG106_DT107 | NAN | NANT | 0 | 0.50 |
| 07 | 1b69_B_DT107_DA108 | NAN | NANT | 0 | 0.42 |
| 08 | 1b69_B_DA108_DA109 | B-A | BA05 | 57 | 0.38 |
| 09 | 1b69_B_DA109_DA110 | BBB | BB01 | 30 | 0.35 |
| 10 | 1b69_B_DA110_DT111 | BBB | BB01 | 71 | 0.31 |
| 11 | 1b69_B_DT111_DT112 | BBB | BB01 | 30 | 0.34 |
| 12 | 1b69_B_DT112_DC113 | AAA | AA02 | 7 | 0.37 |
| 13 | 1b69_C_DG114_DA115 | NAN | NANT | 0 | 0.48 |
| 14 | 1b69_C_DA115_DA116 | B-A | BA05 | 73 | 0.46 |
| 15 | 1b69_C_DA116_DT117 | BBB | BB01 | 63 | 0.24 |
| 16 | 1b69_C_DT117_DT118 | BBB | BB01 | 24 | 0.42 |
| 17 | 1b69_C_DT118_DT119 | BBB | BB01 | 28 | 0.31 |
| 18 | 1b69_C_DT119_DA120 | NAN | NANT | 0 | 0.47 |
| 19 | 1b69_C_DA120_DC121 | BBB | BB00 | 14 | 0.44 |
| 20 | 1b69_C_DC121_DT122 | BBB | BB01 | 33 | 0.46 |
| 21 | 1b69_C_DT122_DA123 | BBB | BB00 | 12 | 0.44 |
| 22 | 1b69_C_DA123_DC124 | B-A | BA05 | 39 | 0.36 |
| 23 | 1b69_C_DC124_DT125 | BBB | BB01 | 74 | 0.15 |
| 24 | 1b69_C_DT125_DC126 | NAN | NANT | 0 | 0.63 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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