Conformers:
ABBIImiBZICOPNSYNN
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3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE CYTIDINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1b60_A_DC1_DG2 | BBB | BB00 | 54 | 0.36 |
| 02 | 1b60_A_DG2_DT3 | BBB | BB00 | 67 | 0.29 |
| 03 | 1b60_A_DT3_DA4 | BBB | BB00 | 68 | 0.30 |
| 04 | 1b60_A_DA4_DC5 | BBB | BB00 | 76 | 0.25 |
| 05 | 1b60_A_DC7_DA8 | BBB | BB00 | 64 | 0.29 |
| 06 | 1b60_A_DA8_DT9 | BBB | BB00 | 77 | 0.19 |
| 07 | 1b60_A_DT9_DG10 | BBB | BB00 | 61 | 0.33 |
| 08 | 1b60_A_DG10_DC11 | B-A | BA01 | 21 | 0.32 |
| 09 | 1b60_B_DG1_DC2 | BBB | BB00 | 47 | 0.37 |
| 10 | 1b60_B_DC2_DA3 | BBB | BB00 | 52 | 0.33 |
| 11 | 1b60_B_DA3_DT4 | BBB | BB00 | 77 | 0.21 |
| 12 | 1b60_B_DT4_DG5 | BBB | BB00 | 47 | 0.41 |
| 13 | 1b60_B_DG5_DC6 | BBB | BB00 | 35 | 0.50 |
| 14 | 1b60_B_DC6_DG7 | BBB | BB00 | 44 | 0.59 |
| 15 | 1b60_B_DG7_DT8 | BBB | BB00 | 65 | 0.34 |
| 16 | 1b60_B_DT8_DA9 | BBB | BB00 | 57 | 0.34 |
| 17 | 1b60_B_DA9_DC10 | BBB | BB00 | 75 | 0.23 |
| 18 | 1b60_B_DC10_DG11 | BBB | BB00 | 65 | 0.33 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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