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Conformers: ABBIImiBZICOPNSYNN
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E. coli cysteinyl-tRNA and T. aquaticus elongation factor EF-TU:GTP ternary complex

Results of the assignment of 67 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011b23_R_G1_G2AAAAA00850.15 AA00
021b23_R_G2_C3AAAAA00870.10 AA00
031b23_R_C3_G4AAAAA00940.18 AA00
041b23_R_G4_C5AAAAA00730.19 AA00
051b23_R_C5_G6AAAAA00800.16 AA00
061b23_R_G6_U7NANNANT00.33 AB04
071b23_R_U7_4SU8NANNANT01.04 OP11
081b23_R_4SU8_A9NANNANT00.99 IC01
091b23_R_A9_A10NANNANT01.38 OP04
101b23_R_A10_C11AAAAA08700.16 AA08
111b23_R_C11_A12AAAAA04540.35 AA04
121b23_R_A12_A13AAAAA00590.24 AA00
131b23_R_A13_A14AAwAA01130.67 AA01
141b23_R_A14_G15AAAAA08730.34 AA08
151b23_R_G15_C16AAAAA08900.08 AA08
161b23_R_C16_G18NANNANT01.43 IC03
171b23_R_G18_G19ICLIC05160.35 IC05
181b23_R_G19_H2U20NANNANT01.19 IC02
191b23_R_H2U20_H2U21NANNANT00.75 OP22
201b23_R_H2U21_A22NANNANT00.95 OP13
211b23_R_A22_U23NANNANT00.73 AA04
221b23_R_U23_G24AAAAA00720.22 AA00
231b23_R_G24_U25AAAAA00560.29 AA00
241b23_R_U25_A26AAwAA06720.26 AA06
251b23_R_A26_G27AAAAA04430.43 AA04
261b23_R_G27_C28AAAAA00880.16 AA00
271b23_R_C28_G29AAAAA00830.19 AA00
281b23_R_G29_G30AAAAA00650.26 AA00
291b23_R_G30_A31AAwAA06810.18 AA06
301b23_R_U33_G34OPNOP03300.46 OP03
311b23_R_G34_C35AAAAA08810.18 AA08
321b23_R_C35_A36AAwAA01200.30 AA01
331b23_R_A36_MIA37AAAAA00110.48 AA00
341b23_R_MIA37_A38NANNANT00.27 AA03
351b23_R_C40_C41AAAAA00140.39 AA00
361b23_R_C41_G42AAAAA00780.20 AA00
371b23_R_G42_U43AAAAA00720.31 AA00
381b23_R_U43_C44A-BAB05620.26 AB05
391b23_R_C44_U45NANNANT01.31 OP17
401b23_R_U45_A46NANNANT01.37 OP13
411b23_R_A46_G48NANNANT00.58 BB11
421b23_R_G48_U49NANNANT01.44 OP05
431b23_R_U49_C50AAAAA00710.21 AA00
441b23_R_C50_C51AAAAA00400.15 AA00
451b23_R_C51_G52AAwAA01210.30 AA01
461b23_R_G52_G53AAAAA00270.32 AA00
471b23_R_G53_5MU54AAAAA00770.15 AA00
481b23_R_C56_G57AAAAA00800.34 AA00
491b23_R_G57_A58ICLIC01850.31 IC01
501b23_R_A58_C59OPNOP25820.30 OP25
511b23_R_C59_U60A-BAB05870.40 AB05
521b23_R_U60_C61OPNOP12610.15 OP12
531b23_R_C61_C62AAAAA00650.26 AA00
541b23_R_C62_G63NANNANT00.58 BB02
551b23_R_G63_G64AAwAA01530.30 AA01
561b23_R_G64_A65AAAAA00400.31 AA00
571b23_R_A65_A66AAAAA00740.19 AA00
581b23_R_A66_C67AAAAA00700.21 AA00
591b23_R_C67_G68AAAAA00770.14 AA00
601b23_R_G68_C69AAAAA00460.20 AA00
611b23_R_C69_G70AAwAA01560.33 AA01
621b23_R_G70_C71NANNANT00.26 AA03
631b23_R_C71_C72NANNANT00.85 AA05
641b23_R_C72_U73AAAAA08520.31 AA08
651b23_R_U73_C74AAAAA00120.53 AA00
661b23_R_C74_C75NANNANT01.11 IC07
671b23_R_C75_A76NANNANT01.31 OP22

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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