Conformers:
ABBIImiBZICOPNSYNN
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HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1azq_B_DG101_DT102 | BBB | BB00 | 15 | 0.30 |
| 02 | 1azq_B_DT102_DA103 | B-A | BA08 | 62 | 0.28 |
| 03 | 1azq_B_DA103_DA104 | ICL | IC01 | 11 | 0.60 |
| 04 | 1azq_B_DA104_DT105 | B-A | BA05 | 56 | 0.30 |
| 05 | 1azq_B_DT105_DT106 | A-B | AB01 | 50 | 0.43 |
| 06 | 1azq_B_DT106_DA107 | B12 | BB04 | 75 | 0.23 |
| 07 | 1azq_B_DA107_DC108 | B-A | BA05 | 51 | 0.19 |
| 08 | 1azq_C_DG109_DT110 | BBB | BB00 | 54 | 0.29 |
| 09 | 1azq_C_DT110_DA111 | BB2 | BB07 | 61 | 0.26 |
| 10 | 1azq_C_DA111_DA112 | BBB | BB01 | 13 | 0.33 |
| 11 | 1azq_C_DA112_DT113 | AAA | AA02 | 59 | 0.42 |
| 12 | 1azq_C_DT113_DT114 | NAN | NANT | 0 | 0.48 |
| 13 | 1azq_C_DT114_DA115 | BBB | BB00 | 84 | 0.18 |
| 14 | 1azq_C_DA115_DC116 | B-A | BA01 | 26 | 0.24 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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