Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
PIT-1 MUTANT/DNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 47 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1au7_C_DT449_DC450 | BBw | BB03 | 60 | 0.34 |
| 02 | 1au7_C_DC450_DC451 | NAN | NANT | 0 | 0.36 |
| 03 | 1au7_C_DC451_DT452 | BBB | BB00 | 16 | 0.30 |
| 04 | 1au7_C_DT452_DC453 | BBw | BB02 | 60 | 0.33 |
| 05 | 1au7_C_DC453_DA454 | B12 | BB04 | 63 | 0.28 |
| 06 | 1au7_C_DA454_DT455 | BBB | BB00 | 77 | 0.22 |
| 07 | 1au7_C_DT455_DG456 | B12 | BB04 | 16 | 0.31 |
| 08 | 1au7_C_DG456_DT457 | NAN | NANT | 0 | 0.48 |
| 09 | 1au7_C_DT457_DA458 | BBB | BB00 | 84 | 0.24 |
| 10 | 1au7_C_DA458_DT459 | BBw | BB03 | 41 | 0.34 |
| 11 | 1au7_C_DT459_DA460 | BBw | BB16 | 62 | 0.57 |
| 12 | 1au7_C_DA460_DT461 | BBB | BB00 | 49 | 0.26 |
| 13 | 1au7_C_DT461_DA462 | BBB | BB00 | 37 | 0.38 |
| 14 | 1au7_C_DA462_DC463 | BBB | BB00 | 57 | 0.28 |
| 15 | 1au7_C_DC463_DA464 | BBw | BB02 | 45 | 0.29 |
| 16 | 1au7_C_DA464_DT465 | BBB | BB00 | 59 | 0.29 |
| 17 | 1au7_C_DT465_DG466 | B12 | BB04 | 75 | 0.23 |
| 18 | 1au7_C_DG466_DA467 | B12 | BB04 | 73 | 0.20 |
| 19 | 1au7_C_DA467_DG468 | B12 | BB04 | 60 | 0.44 |
| 20 | 1au7_C_DG468_DG469 | B12 | BB04 | 87 | 0.19 |
| 21 | 1au7_C_DG469_DA470 | BBB | BB00 | 72 | 0.33 |
| 22 | 1au7_C_DA470_DA471 | BBB | BB00 | 85 | 0.25 |
| 23 | 1au7_C_DA471_DG472 | B12 | BB04 | 71 | 0.22 |
| 24 | 1au7_C_DG472_DG473 | NAN | NANT | 0 | 1.38 |
| 25 | 1au7_D_DC475_DT476 | BBB | BB00 | 58 | 0.34 |
| 26 | 1au7_D_DT476_DT477 | BBB | BB00 | 55 | 0.41 |
| 27 | 1au7_D_DT477_DC478 | B12 | BB04 | 50 | 0.29 |
| 28 | 1au7_D_DC478_DC479 | NAN | NANT | 0 | 0.45 |
| 29 | 1au7_D_DC479_DT480 | NAN | NANT | 0 | 0.63 |
| 30 | 1au7_D_DT480_DC481 | BBB | BB00 | 60 | 0.31 |
| 31 | 1au7_D_DC481_DA482 | BBB | BB00 | 45 | 0.42 |
| 32 | 1au7_D_DA482_DT483 | BBB | BB00 | 45 | 0.32 |
| 33 | 1au7_D_DT483_DG484 | B-A | BA08 | 63 | 0.40 |
| 34 | 1au7_D_DG484_DT485 | A-B | AB01 | 18 | 0.28 |
| 35 | 1au7_D_DT485_DA486 | BBB | BB00 | 78 | 0.21 |
| 36 | 1au7_D_DA486_DT487 | BBB | BB01 | 66 | 0.28 |
| 37 | 1au7_D_DT487_DA488 | BBB | BB01 | 34 | 0.29 |
| 38 | 1au7_D_DA488_DT489 | BBB | BB00 | 43 | 0.28 |
| 39 | 1au7_D_DT489_DA490 | BBB | BB00 | 36 | 0.30 |
| 40 | 1au7_D_DA490_DC491 | BBB | BB00 | 20 | 0.28 |
| 41 | 1au7_D_DC491_DA492 | BBB | BB00 | 74 | 0.25 |
| 42 | 1au7_D_DA492_DT493 | BBB | BB00 | 78 | 0.24 |
| 43 | 1au7_D_DT493_DG494 | B12 | BB04 | 45 | 0.43 |
| 44 | 1au7_D_DG494_DA495 | BB2 | BB07 | 31 | 0.30 |
| 45 | 1au7_D_DA495_DG496 | B12 | BB04 | 86 | 0.23 |
| 46 | 1au7_D_DG496_DG497 | BBB | BB00 | 66 | 0.38 |
| 47 | 1au7_D_DG497_DA498 | NAN | NANT | 0 | 1.02 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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