DNATCO v4.1: results

THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION

Results of the assignment of 136 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1asz_R_U601_C602	AAA	AA00	63	0.17	AA00
002	1asz_R_C602_C603	AAA	AA00	76	0.23	AA00
003	1asz_R_C603_G604	AAA	AA00	89	0.13	AA00
004	1asz_R_G604_U605	AAA	AA08	71	0.19	AA08
005	1asz_R_U605_G606	AAw	AA10	42	0.21	AA10
006	1asz_R_G606_A607	A-B	AB05	60	0.24	AB05
007	1asz_R_A607_U608	NAN	NANT	0	1.29	OP13
008	1asz_R_U608_A609	NAN	NANT	0	1.08	IC04
009	1asz_R_A609_G610	NAN	NANT	0	1.27	OP12
010	1asz_R_G610_U611	AAA	AA04	59	0.30	AA04
011	1asz_R_U611_U612	AAA	AA03	46	0.30	AA03
012	1asz_R_A614_A615	AAA	AA08	72	0.28	AA08
013	1asz_R_A615_H2U616	NAN	NANT	0	0.31	AA02
014	1asz_R_H2U616_G617	NAN	NANT	0	1.53	IC03
015	1asz_R_G617_G618	NAN	NANT	0	0.65	IC06
016	1asz_R_G618_H2U619	NAN	NANT	0	1.30	IC05
017	1asz_R_H2U619_C620	NAN	NANT	0	1.25	ZZS1
018	1asz_R_C620_A621	NAN	NANT	0	0.28	OP29
019	1asz_R_A621_G622	AAu	AA13	68	0.29	AA13
020	1asz_R_G622_A623	AAw	AA01	70	0.16	AA01
021	1asz_R_A623_A624	AAA	AA00	64	0.17	AA00
022	1asz_R_A624_U625	AAA	AA00	45	0.33	AA00
023	1asz_R_U625_G626	AAA	AA00	62	0.23	AA00
024	1asz_R_G626_G627	AAA	AA04	81	0.26	AA04
025	1asz_R_G627_G628	AAA	AA08	17	0.27	AA08
026	1asz_R_G628_C629	AAA	AA02	18	0.43	AA02
027	1asz_R_C629_G630	NAN	NANT	0	0.79	AA05
028	1asz_R_G630_C631	AAA	AA08	84	0.12	AA08
029	1asz_R_U633_G634	NAN	NANT	0	0.77	AA13
030	1asz_R_G634_U635	NAN	NANT	0	1.44	AA04
031	1asz_R_U635_C636	AAA	AA08	73	0.37	AA08
032	1asz_R_C636_1MG637	NAN	NANT	0	0.97	OP30
033	1asz_R_1MG637_C638	NAN	NANT	0	0.53	OP17
034	1asz_R_C638_G639	NAN	NANT	0	0.61	AA02
035	1asz_R_G639_U640	AAA	AA00	58	0.30	AA00
036	1asz_R_U640_G641	AAu	AA12	60	0.29	AA12
037	1asz_R_G641_C642	AAA	AA00	77	0.12	AA00
038	1asz_R_C642_C643	AAA	AA00	92	0.18	AA00
039	1asz_R_C643_A644	AAA	AA00	46	0.20	AA00
040	1asz_R_A644_G645	AAA	AA02	47	0.44	AA02
041	1asz_R_G645_A646	NAN	NANT	0	0.47	IC01
042	1asz_R_A646_U648	NAN	NANT	0	0.66	IC04
043	1asz_R_U648_5MC649	NAN	NANT	0	1.38	OP05
044	1asz_R_5MC649_G650	NAN	NANT	0	0.41	AA04
045	1asz_R_G650_G651	NAN	NANT	0	0.24	AA03
046	1asz_R_G651_G652	AAw	AA06	40	0.24	AA06
047	1asz_R_G652_G653	AAA	AA08	67	0.26	AA08
048	1asz_R_G653_5MU654	AAA	AA08	47	0.27	AA08
049	1asz_R_C656_A657	AAA	AA00	23	0.49	AA00
050	1asz_R_A657_A658	ICL	IC01	80	0.33	IC01
051	1asz_R_A658_U659	NAN	NANT	0	0.30	OP25
052	1asz_R_U659_U660	NAN	NANT	0	0.44	AB01
053	1asz_R_U660_C661	NAN	NANT	0	0.34	OP12
054	1asz_R_C661_C662	AAA	AA00	69	0.18	AA00
055	1asz_R_C662_C663	AAA	AA08	69	0.28	AA08
056	1asz_R_C663_C664	AAA	AA08	69	0.20	AA08
057	1asz_R_C664_G665	AAA	AA00	64	0.23	AA00
058	1asz_R_G665_U666	AAA	AA08	82	0.15	AA08
059	1asz_R_U666_C667	AAA	AA08	54	0.26	AA08
060	1asz_R_C667_G668	AAA	AA08	57	0.33	AA08
061	1asz_R_G668_C669	AAA	AA00	88	0.14	AA00
062	1asz_R_C669_G670	AAA	AA00	11	0.32	AA00
063	1asz_R_G670_G671	AAw	AA01	74	0.18	AA01
064	1asz_R_G671_A672	AAA	AA08	60	0.21	AA08
065	1asz_R_A672_G673	AAA	AA08	59	0.24	AA08
066	1asz_R_G673_C674	AAA	AA00	51	0.34	AA00
067	1asz_R_C674_C675	AAA	AA08	45	0.56	AA08
068	1asz_R_C675_A676	NAN	NANT	0	0.64	OP30
069	1asz_S_U601_C602	AAA	AA00	61	0.14	AA00
070	1asz_S_C602_C603	AAA	AA00	84	0.17	AA00
071	1asz_S_C603_G604	AAA	AA00	50	0.25	AA00
072	1asz_S_G604_U605	AAA	AA08	77	0.20	AA08
073	1asz_S_U605_G606	AAw	AA06	76	0.19	AA06
074	1asz_S_G606_A607	A-B	AB05	60	0.26	AB05
075	1asz_S_A607_U608	OPN	OP11	64	0.37	OP11
076	1asz_S_U608_A609	NAN	NANT	0	0.57	IC07
077	1asz_S_A609_G610	NAN	NANT	0	1.27	OP12
078	1asz_S_G610_U611	AAA	AA04	56	0.34	AA04
079	1asz_S_U611_U612	AAA	AA08	32	0.27	AA08
080	1asz_S_A614_A615	AAA	AA00	48	0.29	AA00
081	1asz_S_A615_H2U616	AAA	AA08	53	0.40	AA08
082	1asz_S_H2U616_G617	NAN	NANT	0	1.68	IC04
083	1asz_S_G617_G618	NAN	NANT	0	0.59	IC06
084	1asz_S_G618_H2U619	NAN	NANT	0	1.78	OP26
085	1asz_S_H2U619_C620	NAN	NANT	0	1.39	ZZ02
086	1asz_S_C620_A621	NAN	NANT	0	0.79	OP01
087	1asz_S_A621_G622	AAu	AA07	76	0.27	AA07
088	1asz_S_G622_A623	AAw	AA10	30	0.31	AA10
089	1asz_S_A623_A624	AAA	AA08	92	0.20	AA08
090	1asz_S_A624_U625	AAA	AA00	70	0.30	AA00
091	1asz_S_U625_G626	AAA	AA04	92	0.17	AA04
092	1asz_S_G626_G627	AAA	AA00	66	0.25	AA00
093	1asz_S_G627_G628	AAA	AA08	64	0.19	AA08
094	1asz_S_G628_C629	AAA	AA00	81	0.22	AA00
095	1asz_S_C629_G630	AAw	AA01	79	0.22	AA01
096	1asz_S_G630_C631	AAA	AA08	78	0.27	AA08
097	1asz_S_U633_G634	NAN	NANT	0	1.45	AB02
098	1asz_S_G634_U635	NAN	NANT	0	1.42	AA04
099	1asz_S_U635_C636	AAA	AA08	54	0.40	AA08
100	1asz_S_C636_1MG637	NAN	NANT	0	1.04	OP30
101	1asz_S_1MG637_C638	NAN	NANT	0	0.61	OP17
102	1asz_S_C638_G639	AAA	AA00	67	0.38	AA00
103	1asz_S_G639_U640	AAA	AA00	61	0.27	AA00
104	1asz_S_U640_G641	AAA	AA08	51	0.40	AA08
105	1asz_S_G641_C642	AAA	AA00	76	0.13	AA00
106	1asz_S_C642_C643	AAA	AA08	85	0.21	AA08
107	1asz_S_C643_A644	AAA	AA04	79	0.26	AA04
108	1asz_S_A644_G645	AAA	AA00	54	0.33	AA00
109	1asz_S_G645_A646	NAN	NANT	0	0.81	AA07
110	1asz_S_A646_U648	NAN	NANT	0	0.55	IC04
111	1asz_S_U648_5MC649	NAN	NANT	0	1.48	OP06
112	1asz_S_5MC649_G650	AAA	AA00	56	0.17	AA00
113	1asz_S_G650_G651	AAA	AA00	81	0.13	AA00
114	1asz_S_G651_G652	AAw	AA10	41	0.25	AA10
115	1asz_S_G652_G653	AAw	AA06	75	0.32	AA06
116	1asz_S_G653_5MU654	AAA	AA08	45	0.26	AA08
117	1asz_S_C656_A657	AAA	AA00	74	0.31	AA00
118	1asz_S_A657_A658	ICL	IC01	73	0.35	IC01
119	1asz_S_A658_U659	OPN	OP25	62	0.23	OP25
120	1asz_S_U659_U660	A-B	AB05	67	0.41	AB05
121	1asz_S_U660_C661	OPN	OP12	40	0.29	OP12
122	1asz_S_C661_C662	AAA	AA00	79	0.20	AA00
123	1asz_S_C662_C663	AAA	AA00	40	0.25	AA00
124	1asz_S_C663_C664	AAA	AA08	54	0.28	AA08
125	1asz_S_C664_G665	AAA	AA08	90	0.15	AA08
126	1asz_S_G665_U666	AAA	AA08	71	0.20	AA08
127	1asz_S_U666_C667	AAA	AA08	68	0.17	AA08
128	1asz_S_C667_G668	AAA	AA08	23	0.28	AA08
129	1asz_S_G668_C669	AAA	AA08	64	0.22	AA08
130	1asz_S_C669_G670	AAA	AA08	79	0.22	AA08
131	1asz_S_G670_G671	AAA	AA00	86	0.16	AA00
132	1asz_S_G671_A672	AAA	AA04	79	0.21	AA04
133	1asz_S_A672_G673	AAA	AA08	74	0.21	AA08
134	1asz_S_G673_C674	AAA	AA00	52	0.26	AA00
135	1asz_S_C674_C675	AAA	AA04	42	0.64	AA04
136	1asz_S_C675_A676	NAN	NANT	0	0.86	OP30

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 136 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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