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Conformers: ABBIImiBZICOPNSYNN
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COMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011aoi_I_DA1_DT2NANNANT00.32 BB13
0021aoi_I_DT2_DC3BBwBB03530.43 BB03
0031aoi_I_DC3_DA4BBBBB00740.34 BB00
0041aoi_I_DA4_DA5BBBBB00220.33 BB00
0051aoi_I_DA5_DT6NANNANT00.38 BB03
0061aoi_I_DT6_DA7BBBBB00520.31 BB00
0071aoi_I_DA7_DT8BBBBB00900.15 BB00
0081aoi_I_DT8_DC9NANNANT00.30 BB05
0091aoi_I_DC9_DC10NANNANT00.67 BB15
0101aoi_I_DC10_DA11B12BB04730.26 BB04
0111aoi_I_DA11_DC12BBBBB00720.29 BB00
0121aoi_I_DC12_DC13BBwBB02200.31 BB02
0131aoi_I_DC13_DT14BBBBB00660.23 BB00
0141aoi_I_DT14_DG15BB2BB07370.23 BB07
0151aoi_I_DG15_DC16miBBB15370.35 BB15
0161aoi_I_DC16_DA17NANNANT00.63 BB00
0171aoi_I_DA17_DG18BBBBB00560.23 BB00
0181aoi_I_DG18_DA19BB2BB08800.39 BB08
0191aoi_I_DA19_DT20BBBBB00460.42 BB00
0201aoi_I_DT20_DT21BBBBB00760.32 BB00
0211aoi_I_DT21_DC22NANNANT00.54 BB13
0221aoi_I_DC22_DT23BBwBB17400.40 BB17
0231aoi_I_DT23_DA24BBBBB00330.35 BB00
0241aoi_I_DA24_DC25NANNANT00.60 BB00
0251aoi_I_DC25_DC26NANNANT00.46 BB15
0261aoi_I_DC26_DA27B12BB04600.30 BB04
0271aoi_I_DA27_DA28B12BB04120.45 BB04
0281aoi_I_DA28_DA29BBwBB02300.37 BB02
0291aoi_I_DA29_DA30BBBBB00600.41 BB00
0301aoi_I_DA30_DG31BBBBB00590.24 BB00
0311aoi_I_DG31_DT32BBBBB00680.31 BB00
0321aoi_I_DT32_DG33BBBBB00930.10 BB00
0331aoi_I_DG33_DT34BBwBB03110.65 BB03
0341aoi_I_DT34_DA35BBBBB00500.37 BB00
0351aoi_I_DA35_DT36BBBBB00840.26 BB00
0361aoi_I_DT36_DT37BBBBB00630.36 BB00
0371aoi_I_DT37_DT38BBBBB00930.13 BB00
0381aoi_I_DT38_DG39BB2BB07740.35 BB07
0391aoi_I_DG39_DG40BBBBB00670.32 BB00
0401aoi_I_DG40_DA41BB2BB07880.24 BB07
0411aoi_I_DA41_DA42BBBBB00500.31 BB00
0421aoi_I_DA42_DA43BBBBB00820.25 BB00
0431aoi_I_DA43_DC44BBwBB02210.27 BB02
0441aoi_I_DC44_DT45BBBBB00810.33 BB00
0451aoi_I_DT45_DG46B12BB04240.21 BB04
0461aoi_I_DG46_DC47miBBB10240.33 BB10
0471aoi_I_DC47_DT48NANNANT00.73 BB02
0481aoi_I_DT48_DC49BBBBB00390.41 BB00
0491aoi_I_DC49_DC50NANNANT00.42 BB11
0501aoi_I_DC50_DA51BBBBB00740.45 BB00
0511aoi_I_DA51_DT52BBBBB00840.21 BB00
0521aoi_I_DT52_DC53BBwBB02580.34 BB02
0531aoi_I_DC53_DA54BBBBB00750.27 BB00
0541aoi_I_DA54_DA55BBBBB00570.41 BB00
0551aoi_I_DA55_DA56NANNANT00.51 BB14
0561aoi_I_DA56_DA57NANNANT00.35 BB04
0571aoi_I_DA57_DG58BBBBB00160.55 BB00
0581aoi_I_DG58_DG59NANNANT00.72 BB14
0591aoi_I_DG59_DC60BBBBB00310.38 BB00
0601aoi_I_DC60_DA61B12BB04490.26 BB04
0611aoi_I_DA61_DT62BBwBB02630.23 BB02
0621aoi_I_DT62_DG63BBBBB00820.38 BB00
0631aoi_I_DG63_DT64BBBBB00510.44 BB00
0641aoi_I_DT64_DT65BBBBB00710.21 BB00
0651aoi_I_DT65_DC66BBBBB00660.21 BB00
0661aoi_I_DC66_DA67B12BB04620.34 BB04
0671aoi_I_DA67_DG68BBwBB02360.37 BB02
0681aoi_I_DG68_DC69BBBBB00570.48 BB00
0691aoi_I_DC69_DT70B12BB04860.21 BB04
0701aoi_I_DT70_DG71BBwBB11700.40 BB11
0711aoi_I_DG71_DA72B12BB04420.38 BB04
0721aoi_I_DA72_DA73B12BB0490.30 BB04
0731aoi_I_DA73_DT74BBBBB00680.31 BB00
0741aoi_I_DT74_DT75BBBBB00930.17 BB00
0751aoi_I_DT75_DC76B12BB04130.39 BB04
0761aoi_I_DC76_DA77BB2BB07850.27 BB07
0771aoi_I_DA77_DG78BBwBB02650.33 BB02
0781aoi_I_DG78_DC79B12BB04160.41 BB04
0791aoi_I_DC79_DT80BBBBB00700.30 BB00
0801aoi_I_DT80_DG81B12BB04770.18 BB04
0811aoi_I_DG81_DA82BBBBB00840.22 BB00
0821aoi_I_DA82_DA83BBBBB00830.12 BB00
0831aoi_I_DA83_DC84miBBB15560.24 BB15
0841aoi_I_DC84_DA85BBBBB00770.25 BB00
0851aoi_I_DA85_DT86BBBBB00800.20 BB00
0861aoi_I_DT86_DG87B12BB04210.32 BB04
0871aoi_I_DG87_DC88B12BB04150.36 BB04
0881aoi_I_DC88_DC89NANNANT00.34 BB10
0891aoi_I_DC89_DT90BB2BB07580.29 BB07
0901aoi_I_DT90_DT91BBBBB00880.12 BB00
0911aoi_I_DT91_DT92BBBBB00840.18 BB00
0921aoi_I_DT92_DT93BBBBB00860.27 BB00
0931aoi_I_DT93_DG94BBwBB02730.16 BB02
0941aoi_I_DG94_DA95BBBBB00880.11 BB00
0951aoi_I_DA95_DT96BBBBB00590.36 BB00
0961aoi_I_DT96_DG97B12BB04820.26 BB04
0971aoi_I_DG97_DG98BBBBB00860.20 BB00
0981aoi_I_DG98_DA99BB2BB07700.39 BB07
0991aoi_I_DA99_DG100BBwBB02370.43 BB02
1001aoi_I_DG100_DC101BBwBB11440.46 BB11
1011aoi_I_DC101_DA102BBBBB00470.39 BB00
1021aoi_I_DA102_DG103BBwBB11750.20 BB11
1031aoi_I_DG103_DT104BBBBB00250.47 BB00
1041aoi_I_DT104_DT105B12BB04780.26 BB04
1051aoi_I_DT105_DT106BBBBB00830.21 BB00
1061aoi_I_DT106_DC107B12BB05620.28 BB05
1071aoi_I_DC107_DC108B12BB04360.50 BB04
1081aoi_I_DC108_DA109BB2BB07770.19 BB07
1091aoi_I_DA109_DA110BBBBB00560.23 BB00
1101aoi_I_DA110_DA111BBBBB00760.22 BB00
1111aoi_I_DA111_DT112BBBBB00510.37 BB00
1121aoi_I_DT112_DA113BBBBB00220.39 BB00
1131aoi_I_DA113_DC114miBBB13800.28 BB13
1141aoi_I_DC114_DA115BBBBB00670.40 BB00
1151aoi_I_DA115_DC116miBBB15150.25 BB15
1161aoi_I_DC116_DT117BBBBB00630.29 BB00
1171aoi_I_DT117_DT118BBBBB00850.25 BB00
1181aoi_I_DT118_DT119BBBBB00210.45 BB00
1191aoi_I_DT119_DT120NANNANT00.43 AB02
1201aoi_I_DT120_DG121BB2BB07550.27 BB07
1211aoi_I_DG121_DG122BBBBB00670.34 BB00
1221aoi_I_DG122_DT123BBBBB00870.19 BB00
1231aoi_I_DT123_DA124BBBBB00790.28 BB00
1241aoi_I_DA124_DG125miBBB12460.46 BB12
1251aoi_I_DG125_DA126BBwBB17170.46 BB17
1261aoi_I_DA126_DA127BBBBB00550.37 BB00
1271aoi_I_DA127_DT128BBBBB00580.35 BB00
1281aoi_I_DT128_DC129BBBBB00390.35 BB00
1291aoi_I_DC129_DT130NANNANT00.35 AB02
1301aoi_I_DT130_DG131BB2BB07890.26 BB07
1311aoi_I_DG131_DC132BBBBB00140.28 BB00
1321aoi_I_DC132_DA133BB2BB07790.34 BB07
1331aoi_I_DA133_DG134BBwBB11560.38 BB11
1341aoi_I_DG134_DG135BBwBB02170.51 BB02
1351aoi_I_DG135_DT136BBBBB00170.40 BB00
1361aoi_I_DT136_DG137BBBBB00300.33 BB00
1371aoi_I_DG137_DG138BBBBB00590.22 BB00
1381aoi_I_DG138_DA139B12BB04470.24 BB04
1391aoi_I_DA139_DT140BBBBB00750.20 BB00
1401aoi_I_DT140_DA141BB2BB07480.26 BB07
1411aoi_I_DA141_DT142B12BB05750.31 BB05
1421aoi_I_DT142_DT143BBBBB00490.36 BB00
1431aoi_I_DT143_DG144BBBBB00910.22 BB00
1441aoi_I_DG144_DA145BBBBB00650.39 BB00
1451aoi_I_DA145_DT146NANNANT00.38 BB10
1461aoi_J_DA147_DT148BBBBB00390.38 BB00
1471aoi_J_DT148_DC149miBBB13340.45 BB13
1481aoi_J_DC149_DA150NANNANT00.74 AB02
1491aoi_J_DA150_DA151BBBBB00490.35 BB00
1501aoi_J_DA151_DT152BBwBB02540.29 BB02
1511aoi_J_DT152_DA153BBBBB00820.28 BB00
1521aoi_J_DA153_DT154BBBBB00940.13 BB00
1531aoi_J_DT154_DC155BBwBB02490.34 BB02
1541aoi_J_DC155_DC156miBBB15810.30 BB15
1551aoi_J_DC156_DA157BBBBB00890.17 BB00
1561aoi_J_DA157_DC158BBwBB02220.36 BB02
1571aoi_J_DC158_DC159BBBBB00380.38 BB00
1581aoi_J_DC159_DT160BBBBB00710.19 BB00
1591aoi_J_DT160_DG161B12BB04640.29 BB04
1601aoi_J_DG161_DC162BBBBB00200.51 BB00
1611aoi_J_DC162_DA163NANNANT00.65 BB14
1621aoi_J_DA163_DG164NANNANT00.55 BB00
1631aoi_J_DG164_DA165NANNANT00.53 BB11
1641aoi_J_DA165_DT166NANNANT00.56 BB03
1651aoi_J_DT166_DT167BBwBB16400.47 BB16
1661aoi_J_DT167_DC168NANNANT00.49 BB17
1671aoi_J_DC168_DT169BBBBB00180.31 BB00
1681aoi_J_DT169_DA170BBBBB00650.17 BB00
1691aoi_J_DA170_DC171BBBBB00660.31 BB00
1701aoi_J_DC171_DC172NANNANT00.36 BB13
1711aoi_J_DC172_DA173B12BB04380.60 BB04
1721aoi_J_DA173_DA174B12BB04410.33 BB04
1731aoi_J_DA174_DA175NANNANT00.31 BB05
1741aoi_J_DA175_DA176BBBBB00410.46 BB00
1751aoi_J_DA176_DG177B12BB04510.12 BB04
1761aoi_J_DG177_DT178BBBBB00510.27 BB00
1771aoi_J_DT178_DG179BBBBB00640.15 BB00
1781aoi_J_DG179_DT180BBwBB11680.19 BB11
1791aoi_J_DT180_DA181BBBBB00320.39 BB00
1801aoi_J_DA181_DT182BBBBB00730.26 BB00
1811aoi_J_DT182_DT183BBBBB00460.46 BB00
1821aoi_J_DT183_DT184BBBBB00970.12 BB00
1831aoi_J_DT184_DG185BB2BB07860.28 BB07
1841aoi_J_DG185_DG186BBBBB00710.32 BB00
1851aoi_J_DG186_DA187BB2BB07920.23 BB07
1861aoi_J_DA187_DA188BBBBB00280.42 BB00
1871aoi_J_DA188_DA189NANNANT00.40 BB14
1881aoi_J_DA189_DC190miBBB13590.28 BB13
1891aoi_J_DC190_DT191BBBBB00330.51 BB00
1901aoi_J_DT191_DG192BB2BB07270.17 BB07
1911aoi_J_DG192_DC193BBBBB00210.21 BB00
1921aoi_J_DC193_DT194BB2BB08520.35 BB08
1931aoi_J_DT194_DC195miBBB15150.58 BB15
1941aoi_J_DC195_DC196BBBBB00770.38 BB00
1951aoi_J_DC196_DA197BBBBB00810.23 BB00
1961aoi_J_DA197_DT198BBBBB00460.34 BB00
1971aoi_J_DT198_DC199BBBBB00180.35 BB00
1981aoi_J_DC199_DA200BBBBB00570.23 BB00
1991aoi_J_DA200_DA201miBBB10820.20 BB10
2001aoi_J_DA201_DA202B12BB04820.17 BB04
2011aoi_J_DA202_DA203BBBBB00510.33 BB00
2021aoi_J_DA203_DG204BBBBB00310.49 BB00
2031aoi_J_DG204_DG205B12BB04320.32 BB04
2041aoi_J_DG205_DC206B12BB05460.36 BB05
2051aoi_J_DC206_DA207BBBBB00660.33 BB00
2061aoi_J_DA207_DT208BBBBB00900.14 BB00
2071aoi_J_DT208_DG209BBBBB00590.21 BB00
2081aoi_J_DG209_DT210BBBBB00740.27 BB00
2091aoi_J_DT210_DT211BBBBB00870.20 BB00
2101aoi_J_DT211_DC212BBBBB00750.21 BB00
2111aoi_J_DC212_DA213BBBBB00700.26 BB00
2121aoi_J_DA213_DG214BB2BB07580.34 BB07
2131aoi_J_DG214_DC215BBBBB00670.24 BB00
2141aoi_J_DC215_DT216BB2BB07770.18 BB07
2151aoi_J_DT216_DG217B12BB04450.37 BB04
2161aoi_J_DG217_DA218B12BB04700.32 BB04
2171aoi_J_DA218_DA219B12BB04230.20 BB04
2181aoi_J_DA219_DT220BBBBB00620.24 BB00
2191aoi_J_DT220_DT221BBBBB00930.15 BB00
2201aoi_J_DT221_DC222B12BB04270.38 BB04
2211aoi_J_DC222_DA223B12BB04770.23 BB04
2221aoi_J_DA223_DG224B12BB04110.50 BB04
2231aoi_J_DG224_DC225NANNANT00.19 BB10
2241aoi_J_DC225_DT226BB2BB07790.27 BB07
2251aoi_J_DT226_DG227BBwBB11730.35 BB11
2261aoi_J_DG227_DA228BBBBB00600.41 BB00
2271aoi_J_DA228_DA229BBBBB00940.20 BB00
2281aoi_J_DA229_DC230miBBB15640.21 BB15
2291aoi_J_DC230_DA231miBBB10710.32 BB10
2301aoi_J_DA231_DT232BBwBB03570.30 BB03
2311aoi_J_DT232_DG233B12BB04620.35 BB04
2321aoi_J_DG233_DC234BBBBB00300.39 BB00
2331aoi_J_DC234_DC235BBBBB00180.45 BB00
2341aoi_J_DC235_DT236BBBBB00370.34 BB00
2351aoi_J_DT236_DT237B12BB04810.23 BB04
2361aoi_J_DT237_DT238BBwBB03610.38 BB03
2371aoi_J_DT238_DT239BBwBB02350.44 BB02
2381aoi_J_DT239_DG240miBBB13730.22 BB13
2391aoi_J_DG240_DA241BBwBB03490.37 BB03
2401aoi_J_DA241_DT242BBwBB17260.34 BB17
2411aoi_J_DT242_DG243BBwBB11720.28 BB11
2421aoi_J_DG243_DG244BBBBB00360.45 BB00
2431aoi_J_DG244_DA245BB2BB07800.26 BB07
2441aoi_J_DA245_DG246BBwBB11600.37 BB11
2451aoi_J_DG246_DC247miBBB10210.42 BB10
2461aoi_J_DC247_DA248NANNANT00.44 BB11
2471aoi_J_DA248_DG249NANNANT00.58 BB11
2481aoi_J_DG249_DT250BBBBB00220.36 BB00
2491aoi_J_DT250_DT251BBBBB00800.28 BB00
2501aoi_J_DT251_DT252BBBBB00800.23 BB00
2511aoi_J_DT252_DC253BBBBB00610.29 BB00
2521aoi_J_DC253_DC254B12BB04250.32 BB04
2531aoi_J_DC254_DA255B12BB04320.37 BB04
2541aoi_J_DA255_DA256BBBBB00660.24 BB00
2551aoi_J_DA256_DA257B12BB04840.12 BB04
2561aoi_J_DA257_DT258BBwBB02810.29 BB02
2571aoi_J_DT258_DA259BBBBB00450.38 BB00
2581aoi_J_DA259_DC260miBBB15590.21 BB15
2591aoi_J_DC260_DA261BBBBB00790.21 BB00
2601aoi_J_DA261_DC262NANNANT00.41 BB08
2611aoi_J_DC262_DT263BBBBB00740.31 BB00
2621aoi_J_DT263_DT264BBBBB00660.30 BB00
2631aoi_J_DT264_DT265B12BB04420.26 BB04
2641aoi_J_DT265_DT266BBBBB00260.43 BB00
2651aoi_J_DT266_DG267B12BB04500.29 BB04
2661aoi_J_DG267_DG268BBBBB00740.39 BB00
2671aoi_J_DG268_DT269BBBBB00630.24 BB00
2681aoi_J_DT269_DA270BB2BB07490.23 BB07
2691aoi_J_DA270_DG271BBBBB00610.39 BB00
2701aoi_J_DG271_DA272BBBBB00680.32 BB00
2711aoi_J_DA272_DA273BBBBB00660.17 BB00
2721aoi_J_DA273_DT274BBBBB00880.21 BB00
2731aoi_J_DT274_DC275B12BB05600.28 BB05
2741aoi_J_DC275_DT276BBwBB16580.43 BB16
2751aoi_J_DT276_DG277NANNANT00.46 BB08
2761aoi_J_DG277_DC278miBBB15620.43 BB15
2771aoi_J_DC278_DA279BB2BB07490.28 BB07
2781aoi_J_DA279_DG280BBwBB11520.41 BB11
2791aoi_J_DG280_DG281BBBBB00420.39 BB00
2801aoi_J_DG281_DT282BBwBB02490.30 BB02
2811aoi_J_DT282_DG283BBBBB00610.38 BB00
2821aoi_J_DG283_DG284B12BB04510.27 BB04
2831aoi_J_DG284_DA285B12BB04570.27 BB04
2841aoi_J_DA285_DT286BBBBB00290.49 BB00
2851aoi_J_DT286_DA287BBwBB03370.53 BB03
2861aoi_J_DA287_DT288BBBBB00550.28 BB00
2871aoi_J_DT288_DT289B12BB05690.27 BB05
2881aoi_J_DT289_DG290BBBBB00590.45 BB00
2891aoi_J_DG290_DA291B12BB04880.17 BB04
2901aoi_J_DA291_DT292BBBBB00830.22 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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