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Conformers: ABBIImiBZICOPNSYNN
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STRUCTURE AND FUNCTION OF THE B/HLH/Z DOMAIN OF USF

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011an4_C_DC301_DA302NANNANT00.58 BB10
021an4_C_DA302_DC303NANNANT00.56 AA11
031an4_C_DC303_DC304NANNANT00.98 AB02
041an4_C_DC304_DC305NANNANT00.73 AA01
051an4_C_DC305_DG306NANNANT00.96 AA10
061an4_C_DG306_DG307AAwAA01120.41 AA01
071an4_C_DG307_DT308NANNANT00.60 BB10
081an4_C_DT308_DC309NANNANT00.55 BB15
091an4_C_DC309_DA310NANNANT00.68 BA08
101an4_C_DA310_DC311A-BAB01200.47 AB01
111an4_C_DC311_DG312BBBBB00390.29 BB00
121an4_C_DG312_DT313NANNANT00.62 BB03
131an4_C_DT313_DG314AAwAA06460.47 AA06
141an4_C_DG314_DG315NANNANT00.60 AB02
151an4_C_DG315_DC316NANNANT00.42 BB17
161an4_C_DC316_DC317NANNANT00.85 BB03
171an4_C_DC317_DT318NANNANT00.49 BB10
181an4_C_DT318_DA319NANNANT00.29 BA17
191an4_C_DA319_DC320NANNANT00.56 BB17
201an4_C_DC320_DA321NANNANT00.79 OP24
211an4_D_DG322_DT323NANNANT01.06 BB17
221an4_D_DT323_DG324NANNANT00.79 BA08
231an4_D_DG324_DT325NANNANT00.98 AB02
241an4_D_DT325_DA326NANNANT00.80 AB02
251an4_D_DA326_DG327NANNANT00.95 AA08
261an4_D_DG327_DG328NANNANT01.19 AA10
271an4_D_DG328_DC329AAAAA04130.52 AA04
281an4_D_DC329_DC330NANNANT00.39 AA03
291an4_D_DC330_DA331NANNANT00.41 AB03
301an4_D_DA331_DC332NANNANT00.39 AA01
311an4_D_DC332_DG333NANNANT00.61 AA10
321an4_D_DG333_DT334NANNANT00.55 BB03
331an4_D_DT334_DG335NANNANT00.87 BB02
341an4_D_DG335_DA336NANNANT00.89 OP24
351an4_D_DA336_DC337NANNANT00.54 BB15
361an4_D_DC337_DC338NANNANT00.72 BA13
371an4_D_DC338_DG339A-BAB05130.43 AB05
381an4_D_DG339_DG340NANNANT00.57 BB02
391an4_D_DG340_DG341NANNANT00.86 OP24
401an4_D_DG341_DT342NANNANT00.99 BA09

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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