Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
HIV-2 TRANS ACTIVATING REGION RNA COMPLEX WITH ARGININAMIDE, NMR, MINIMIZED AVERAGE STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1akx_A_G16_G17 | AAw | AA01 | 84 | 0.18 |
| 02 | 1akx_A_G17_C18 | AAA | AA00 | 75 | 0.23 |
| 03 | 1akx_A_C18_C19 | AAw | AA01 | 87 | 0.15 |
| 04 | 1akx_A_C19_A20 | AAA | AA00 | 80 | 0.23 |
| 05 | 1akx_A_A20_G21 | AAA | AA00 | 59 | 0.25 |
| 06 | 1akx_A_G21_A22 | AAw | AA01 | 26 | 0.35 |
| 07 | 1akx_A_A22_U23 | NAN | NANT | 0 | 0.69 |
| 08 | 1akx_A_U23_U25 | NAN | NANT | 0 | 1.34 |
| 09 | 1akx_A_U25_G26 | NAN | NANT | 0 | 2.06 |
| 10 | 1akx_A_G26_A27 | AAw | AA01 | 83 | 0.15 |
| 11 | 1akx_A_A27_G28 | AAA | AA00 | 73 | 0.21 |
| 12 | 1akx_A_G28_C29 | AAA | AA00 | 74 | 0.25 |
| 13 | 1akx_A_C29_C30 | A-B | AB05 | 70 | 0.19 |
| 14 | 1akx_A_C30_U31 | NAN | NANT | 0 | 1.02 |
| 15 | 1akx_A_U31_G32 | NAN | NANT | 0 | 1.21 |
| 16 | 1akx_A_G32_G33 | NAN | NANT | 0 | 0.93 |
| 17 | 1akx_A_G33_G34 | NAN | NANT | 0 | 1.40 |
| 18 | 1akx_A_G34_A35 | NAN | NANT | 0 | 1.39 |
| 19 | 1akx_A_A35_G36 | NAN | NANT | 0 | 0.97 |
| 20 | 1akx_A_G36_C37 | AAA | AA08 | 73 | 0.20 |
| 21 | 1akx_A_C37_U38 | AAA | AA00 | 73 | 0.20 |
| 22 | 1akx_A_U38_C39 | AAw | AA01 | 79 | 0.23 |
| 23 | 1akx_A_C39_U40 | AAA | AA08 | 16 | 0.47 |
| 24 | 1akx_A_U40_C41 | AAA | AA00 | 45 | 0.28 |
| 25 | 1akx_A_C41_U42 | AAA | AA04 | 88 | 0.24 |
| 26 | 1akx_A_U42_G43 | AAA | AA04 | 89 | 0.18 |
| 27 | 1akx_A_G43_G44 | AAw | AA01 | 74 | 0.25 |
| 28 | 1akx_A_G44_C45 | AAA | AA00 | 80 | 0.14 |
| 29 | 1akx_A_C45_C46 | AAA | AA08 | 77 | 0.24 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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