Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1ais_C_DA1401_DA1402 | BBw | BB16 | 53 | 0.62 |
| 02 | 1ais_C_DA1402_DC1403 | BBw | BB02 | 78 | 0.24 |
| 03 | 1ais_C_DC1403_DT1404 | BBw | BB02 | 48 | 0.35 |
| 04 | 1ais_C_DT1404_DT1405 | BBB | BB00 | 89 | 0.16 |
| 05 | 1ais_C_DT1405_DA1406 | BBB | BB00 | 91 | 0.23 |
| 06 | 1ais_C_DA1406_DC1407 | B12 | BB04 | 42 | 0.29 |
| 07 | 1ais_C_DC1407_DT1408 | A-B | AB03 | 41 | 0.56 |
| 08 | 1ais_C_DT1408_DT1409 | NAN | NANT | 0 | 0.67 |
| 09 | 1ais_C_DT1409_DT1410 | NAN | NANT | 0 | 0.39 |
| 10 | 1ais_C_DT1410_5IU1411 | A-B | AB03 | 61 | 0.45 |
| 11 | 1ais_C_5IU1411_5IU1412 | AAA | AA02 | 9 | 0.33 |
| 12 | 1ais_C_5IU1412_DA1413 | AAA | AA02 | 23 | 0.35 |
| 13 | 1ais_C_DA1413_DA1414 | AAA | AA02 | 30 | 0.15 |
| 14 | 1ais_C_DA1414_DA1415 | NAN | NANT | 0 | 0.74 |
| 15 | 1ais_C_DA1415_DG1416 | BBB | BB00 | 74 | 0.25 |
| 16 | 1ais_C_DG1416_DC1417 | B12 | BB04 | 69 | 0.24 |
| 17 | 1ais_E_DG1418_DC1419 | NAN | NANT | 0 | 0.54 |
| 18 | 1ais_E_DC1419_DT1420 | NAN | NANT | 0 | 0.42 |
| 19 | 1ais_E_DT1420_DT1421 | BBw | BB16 | 16 | 0.62 |
| 20 | 1ais_E_DT1421_DT1422 | BBw | BB02 | 20 | 0.33 |
| 21 | 1ais_E_DT1422_DA1423 | BBB | BB00 | 43 | 0.44 |
| 22 | 1ais_E_DA1423_DA1424 | BBB | BB01 | 18 | 0.51 |
| 23 | 1ais_E_DA1424_DA1425 | AAA | AA02 | 24 | 0.30 |
| 24 | 1ais_E_DA1425_DA1426 | AAA | AA02 | 26 | 0.17 |
| 25 | 1ais_E_DA1426_DA1427 | NAN | NANT | 0 | 0.61 |
| 26 | 1ais_E_DA1427_DG1428 | BBB | BB00 | 51 | 0.27 |
| 27 | 1ais_E_DG1428_DT1429 | BBB | BB01 | 90 | 0.17 |
| 28 | 1ais_E_DT1429_DA1430 | BBB | BB00 | 74 | 0.21 |
| 29 | 1ais_E_DA1430_DA1431 | BBB | BB00 | 84 | 0.19 |
| 30 | 1ais_E_DA1431_DG1432 | B12 | BB04 | 89 | 0.14 |
| 31 | 1ais_E_DG1432_DT1433 | BBw | BB02 | 86 | 0.21 |
| 32 | 1ais_E_DT1433_DT1434 | BBB | BB00 | 68 | 0.25 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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